MultiQC Report

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

This report has been generated by the bigbio/quantms analysis pipeline. For information about how to interpret these results, please see the documentation.

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Report generated on 2026-08-13, 13:22 UTC based on data in: /home/runner/work/pmultiqc/pmultiqc/data_temp

Because this report contains a lot of samples, you may need to click 'Show plot' to see some graphs.

pmultiqc

pmultiqc is a MultiQC module to show the pipeline performance of mass spectrometry based quantification pipelines such as nf-core/quantms, MaxQuant, DIA-NN, FragPipe, nf-core/mhcquant, and QPX.https://github.com/bigbio/pmultiqc

Experimental Design and Metadata

Experimental Design

This table shows the design of the experiment. I.e., which files and channels correspond to which sample/condition/fraction.

You can see details about it in https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/classOpenMS_1_1ExperimentalDesign.html

Showing ¹⁶⁰/₁₆₀ rows and ⁵/₅ columns.

Sample Name	Condition	BioReplicate	Fraction Group	Fraction	Label
Sample 1	blood plasma	1
↳ FP-1A1			1	1	1
Sample 2	blood plasma	2
↳ FP-1A2			2	1	1
Sample 3	blood plasma	3
↳ FP-1A3			3	1	1
Sample 4	blood plasma	4
↳ FP-1A4			4	1	1
Sample 5	blood plasma	5
↳ FP-1B1			5	1	1
Sample 6	blood plasma	6
↳ FP-1B2			6	1	1
Sample 7	blood plasma	7
↳ FP-1B3			7	1	1
Sample 8	blood plasma	8
↳ FP-1B4			8	1	1
Sample 9	blood plasma	9
↳ FP-1C1			9	1	1
Sample 10	blood plasma	10
↳ FP-1C2			10	1	1
Sample 11	blood plasma	11
↳ FP-1C3			11	1	1
Sample 12	blood plasma	12
↳ FP-1C4			12	1	1
Sample 13	blood plasma	13
↳ FP-1D1			13	1	1
Sample 14	blood plasma	14
↳ FP-1D2			14	1	1
Sample 15	blood plasma	15
↳ FP-1D3			15	1	1
Sample 16	blood plasma	16
↳ FP-1D4			16	1	1
Sample 17	blood plasma	17
↳ FP-1E1			17	1	1
Sample 18	blood plasma	18
↳ FP-1E2			18	1	1
Sample 19	blood plasma	19
↳ FP-1E3			19	1	1
Sample 20	blood plasma	20
↳ FP-1E4			20	1	1
Sample 21	blood plasma	21
↳ FP-2A1			21	1	1
Sample 22	blood plasma	22
↳ FP-2A2			22	1	1
Sample 23	blood plasma	23
↳ FP-2A3			23	1	1
Sample 24	blood plasma	24
↳ FP-2A4			24	1	1
Sample 25	blood plasma	25
↳ FP-2B1			25	1	1
Sample 26	blood plasma	26
↳ FP-2B2			26	1	1
Sample 27	blood plasma	27
↳ FP-2B3			27	1	1
Sample 28	blood plasma	28
↳ FP-2B4			28	1	1
Sample 29	blood plasma	29
↳ FP-2C1			29	1	1
Sample 30	blood plasma	30
↳ FP-2C2			30	1	1
Sample 31	blood plasma	31
↳ FP-2C3			31	1	1
Sample 32	blood plasma	32
↳ FP-2C4			32	1	1
Sample 33	blood plasma	33
↳ FP-2D1			33	1	1
Sample 34	blood plasma	34
↳ FP-2D2			34	1	1
Sample 35	blood plasma	35
↳ FP-2D3			35	1	1
Sample 36	blood plasma	36
↳ FP-2D4			36	1	1
Sample 37	blood plasma	37
↳ FP-2E1			37	1	1
Sample 38	blood plasma	38
↳ FP-2E2			38	1	1
Sample 39	blood plasma	39
↳ FP-2E3			39	1	1
Sample 40	blood plasma	40
↳ FP-2E4			40	1	1
Sample 41	blood plasma	41
↳ FP-3A1			41	1	1
Sample 42	blood plasma	42
↳ FP-3A2			42	1	1
Sample 43	blood plasma	43
↳ FP-3A3			43	1	1
Sample 44	blood plasma	44
↳ FP-3A4			44	1	1
Sample 45	blood plasma	45
↳ FP-3B1			45	1	1
Sample 46	blood plasma	46
↳ FP-3B2			46	1	1
Sample 47	blood plasma	47
↳ FP-3B3			47	1	1
Sample 48	blood plasma	48
↳ FP-3B4			48	1	1
Sample 49	blood plasma	49
↳ FP-3C1			49	1	1
Sample 50	blood plasma	50
↳ FP-3C2			50	1	1
Sample 51	blood plasma	51
↳ FP-3C3			51	1	1
Sample 52	blood plasma	52
↳ FP-3C4			52	1	1
Sample 53	blood plasma	53
↳ FP-3D1			53	1	1
Sample 54	blood plasma	54
↳ FP-3D2			54	1	1
Sample 55	blood plasma	55
↳ FP-3D3			55	1	1
Sample 56	blood plasma	56
↳ FP-3D4			56	1	1
Sample 57	blood plasma	57
↳ FP-3E1			57	1	1
Sample 58	blood plasma	58
↳ FP-3E2			58	1	1
Sample 59	blood plasma	59
↳ FP-3E3			59	1	1
Sample 60	blood plasma	60
↳ FP-3E4			60	1	1
Sample 61	blood plasma	61
↳ FP-4A1			61	1	1
Sample 62	blood plasma	62
↳ FP-4A2			62	1	1
Sample 63	blood plasma	63
↳ FP-4A3			63	1	1
Sample 64	blood plasma	64
↳ FP-4A4			64	1	1
Sample 65	blood plasma	65
↳ FP-4B1			65	1	1
Sample 66	blood plasma	66
↳ FP-4B2			66	1	1
Sample 67	blood plasma	67
↳ FP-4B3			67	1	1
Sample 68	blood plasma	68
↳ FP-4B4			68	1	1
Sample 69	blood plasma	69
↳ FP-4C1			69	1	1
Sample 70	blood plasma	70
↳ FP-4C2			70	1	1
Sample 71	blood plasma	71
↳ FP-4C3			71	1	1
Sample 72	blood plasma	72
↳ FP-4C4			72	1	1
Sample 73	blood plasma	73
↳ FP-4D1			73	1	1
Sample 74	blood plasma	74
↳ FP-4D2			74	1	1
Sample 75	blood plasma	75
↳ FP-4D3			75	1	1
Sample 76	blood plasma	76
↳ FP-4D4			76	1	1
Sample 77	blood plasma	77
↳ FP-4E1			77	1	1
Sample 78	blood plasma	78
↳ FP-4E2			78	1	1
Sample 79	blood plasma	79
↳ FP-4E3			79	1	1
Sample 80	blood plasma	80
↳ FP-4E4			80	1	1
Sample 81	blood plasma	81
↳ MP-1A1			81	1	1
Sample 82	blood plasma	82
↳ MP-1A2			82	1	1
Sample 83	blood plasma	83
↳ MP-1A3			83	1	1
Sample 84	blood plasma	84
↳ MP-1A4			84	1	1
Sample 85	blood plasma	85
↳ MP-1B1			85	1	1
Sample 86	blood plasma	86
↳ MP-1B2			86	1	1
Sample 87	blood plasma	87
↳ MP-1B3			87	1	1
Sample 88	blood plasma	88
↳ MP-1B4			88	1	1
Sample 89	blood plasma	89
↳ MP-1C1			89	1	1
Sample 90	blood plasma	90
↳ MP-1C2			90	1	1
Sample 91	blood plasma	91
↳ MP-1C3			91	1	1
Sample 92	blood plasma	92
↳ MP-1C4			92	1	1
Sample 93	blood plasma	93
↳ MP-1D1			93	1	1
Sample 94	blood plasma	94
↳ MP-1D2			94	1	1
Sample 95	blood plasma	95
↳ MP-1D3			95	1	1
Sample 96	blood plasma	96
↳ MP-1D4			96	1	1
Sample 97	blood plasma	97
↳ MP-1E1			97	1	1
Sample 98	blood plasma	98
↳ MP-1E2			98	1	1
Sample 99	blood plasma	99
↳ MP-1E3			99	1	1
Sample 100	blood plasma	100
↳ MP-1E4			100	1	1
Sample 101	blood plasma	101
↳ MP-2A1			101	1	1
Sample 102	blood plasma	102
↳ MP-2A2			102	1	1
Sample 103	blood plasma	103
↳ MP-2A3			103	1	1
Sample 104	blood plasma	104
↳ MP-2A4			104	1	1
Sample 105	blood plasma	105
↳ MP-2B1			105	1	1
Sample 106	blood plasma	106
↳ MP-2B2			106	1	1
Sample 107	blood plasma	107
↳ MP-2B3			107	1	1
Sample 108	blood plasma	108
↳ MP-2B4			108	1	1
Sample 109	blood plasma	109
↳ MP-2C1			109	1	1
Sample 110	blood plasma	110
↳ MP-2C2			110	1	1
Sample 111	blood plasma	111
↳ MP-2C3			111	1	1
Sample 112	blood plasma	112
↳ MP-2C4			112	1	1
Sample 113	blood plasma	113
↳ MP-2D1			113	1	1
Sample 114	blood plasma	114
↳ MP-2D2			114	1	1
Sample 115	blood plasma	115
↳ MP-2D3			115	1	1
Sample 116	blood plasma	116
↳ MP-2D4			116	1	1
Sample 117	blood plasma	117
↳ MP-2E1			117	1	1
Sample 118	blood plasma	118
↳ MP-2E2			118	1	1
Sample 119	blood plasma	119
↳ MP-2E3			119	1	1
Sample 120	blood plasma	120
↳ MP-2E4			120	1	1
Sample 121	blood plasma	121
↳ MP-3A1			121	1	1
Sample 122	blood plasma	122
↳ MP-3A2			122	1	1
Sample 123	blood plasma	123
↳ MP-3A3			123	1	1
Sample 124	blood plasma	124
↳ MP-3A4			124	1	1
Sample 125	blood plasma	125
↳ MP-3B1			125	1	1
Sample 126	blood plasma	126
↳ MP-3B2			126	1	1
Sample 127	blood plasma	127
↳ MP-3B3			127	1	1
Sample 128	blood plasma	128
↳ MP-3B4			128	1	1
Sample 129	blood plasma	129
↳ MP-3C1			129	1	1
Sample 130	blood plasma	130
↳ MP-3C2			130	1	1
Sample 131	blood plasma	131
↳ MP-3C3			131	1	1
Sample 132	blood plasma	132
↳ MP-3C4			132	1	1
Sample 133	blood plasma	133
↳ MP-3D1			133	1	1
Sample 134	blood plasma	134
↳ MP-3D2			134	1	1
Sample 135	blood plasma	135
↳ MP-3D3			135	1	1
Sample 136	blood plasma	136
↳ MP-3D4			136	1	1
Sample 137	blood plasma	137
↳ MP-3E1			137	1	1
Sample 138	blood plasma	138
↳ MP-3E2			138	1	1
Sample 139	blood plasma	139
↳ MP-3E3			139	1	1
Sample 140	blood plasma	140
↳ MP-3E4			140	1	1
Sample 141	blood plasma	141
↳ MP-4A1			141	1	1
Sample 142	blood plasma	142
↳ MP-4A2			142	1	1
Sample 143	blood plasma	143
↳ MP-4A3			143	1	1
Sample 144	blood plasma	144
↳ MP-4A4			144	1	1
Sample 145	blood plasma	145
↳ MP-4B1			145	1	1
Sample 146	blood plasma	146
↳ MP-4B2			146	1	1
Sample 147	blood plasma	147
↳ MP-4B3			147	1	1
Sample 148	blood plasma	148
↳ MP-4B4			148	1	1
Sample 149	blood plasma	149
↳ MP-4C1			149	1	1
Sample 150	blood plasma	150
↳ MP-4C2			150	1	1
Sample 151	blood plasma	151
↳ MP-4C3			151	1	1
Sample 152	blood plasma	152
↳ MP-4C4			152	1	1
Sample 153	blood plasma	153
↳ MP-4D1			153	1	1
Sample 154	blood plasma	154
↳ MP-4D2			154	1	1
Sample 155	blood plasma	155
↳ MP-4D3			155	1	1
Sample 156	blood plasma	156
↳ MP-4D4			156	1	1
Sample 157	blood plasma	157
↳ MP-4E1			157	1	1
Sample 158	blood plasma	158
↳ MP-4E2			158	1	1
Sample 159	blood plasma	159
↳ MP-4E3			159	1	1
Sample 160	blood plasma	160
↳ MP-4E4			160	1	1

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: experimental_design_table

Sort	Column	Description	ID
\|\|	Condition	Condition	`Condition`
\|\|	BioReplicate	BioReplicate	`BioReplicate`
\|\|	Fraction Group	Fraction Group	`FractionGroup`
\|\|	Fraction	Fraction Identifier	`Fraction`
\|\|	Label	Label	`Label`

Results Overview

Summary Table

This table shows the summary statistics of the submitted data.

Showing ¹/₁ rows.

#Peptides Quantified	#Proteins Quantified
5447	865

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: identification_summary_table_table

Sort	Visible	Group	Column	Description	ID	Scale
\|\|			#Proteins Quantified	#Proteins Quantified	`Proteins_Quantified`

HeatMap

This heatmap provides an overview of the performance of the quantms DIA (DIA-NN) results.

This plot shows the pipeline performance overview. Some metrics are calculated. *Heatmap score[Contaminants]: as fraction of summed intensity with 0 = sample full of contaminants; 1 = no contaminants *Heatmap score[Pep Intensity (>23.0)]: Linear scale of the median intensity reaching the threshold, i.e. reaching 2^21 of 2^23 gives score 0.25. *Heatmap score[Charge]: Deviation of the charge 2 proportion from a representative Raw file (median). For typtic digests, peptides of charge 2 (one N-terminal and one at tryptic C-terminal R or K residue) should be dominant. Ionization issues (voltage?), in-source fragmentation, missed cleavages and buffer irregularities can cause a shift (see Bittremieux 2017, DOI: 10.1002/mas.21544) *Heatmap score[RT Alignment]: Compute 1 minus the mean absolute difference between 'RT' and 'Predicted.RT', and take the maximum of this value and 0. 1: |RT - Predicted.RT| = 0 *Heatmap score [ID rate over RT]: Judge column occupancy over retention time. Ideally, the LC gradient is chosen such that the number of identifications (here, after FDR filtering) is uniform over time, to ensure consistent instrument duty cycles. Sharp peaks and uneven distribution of identifications over time indicate potential for LC gradient optimization.Scored using 'Uniform' scoring function. i.e. constant receives good score, extreme shapes are bad *Heatmap score [Norm Factor]: Computes the mean absolute deviation (MAD) of 'Normalisation.Factor' from its mean. 0 = high variability in normalization factors; 1 = perfectly consistent normalization factors *Heatmap score [Peak Width]: Average peak width (RT.Stop - RT.Start). 1 = peak width equals 0; 0 = peak width equals 1 or greater

Created with MultiQC

Pipeline Result Statistics

This plot shows the final pipeline results.

Including Sample Name, Possible Study Variables, identified the number of peptide in the pipeline, and identified the number of modified peptide in the pipeline, eg. All data in this table are obtained from the out_msstats file. You can also remove the decoy with the `remove_decoy` parameter. In the FragPipe results summary, the data were obtained from psm.tsv.

Showing ¹⁶⁰/₁₆₀ rows and ⁶/₆ columns.

Sample Name	Condition	Fraction	#Peptide IDs	#Unambiguous Peptide IDs	#Protein (group) IDs
Sample 1	blood plasma		3710	3432	585
↳ FP-1A1		1	3710	3432	585
Sample 2	blood plasma		3856	3572	598
↳ FP-1A2		1	3856	3572	598
Sample 3	blood plasma		3767	3503	576
↳ FP-1A3		1	3767	3503	576
Sample 4	blood plasma		3798	3526	579
↳ FP-1A4		1	3798	3526	579
Sample 5	blood plasma		3855	3567	652
↳ FP-1B1		1	3855	3567	652
Sample 6	blood plasma		3921	3621	632
↳ FP-1B2		1	3921	3621	632
Sample 7	blood plasma		3931	3660	611
↳ FP-1B3		1	3931	3660	611
Sample 8	blood plasma		3832	3565	585
↳ FP-1B4		1	3832	3565	585
Sample 9	blood plasma		3717	3443	565
↳ FP-1C1		1	3717	3443	565
Sample 10	blood plasma		3706	3433	573
↳ FP-1C2		1	3706	3433	573
Sample 11	blood plasma		3787	3516	580
↳ FP-1C3		1	3787	3516	580
Sample 12	blood plasma		3865	3539	582
↳ FP-1C4		1	3865	3539	582
Sample 13	blood plasma		3543	3304	520
↳ FP-1D1		1	3543	3304	520
Sample 14	blood plasma		3867	3566	599
↳ FP-1D2		1	3867	3566	599
Sample 15	blood plasma		3775	3503	578
↳ FP-1D3		1	3775	3503	578
Sample 16	blood plasma		3826	3533	583
↳ FP-1D4		1	3826	3533	583
Sample 17	blood plasma		3543	3294	558
↳ FP-1E1		1	3543	3294	558
Sample 18	blood plasma		3653	3390	574
↳ FP-1E2		1	3653	3390	574
Sample 19	blood plasma		3753	3473	587
↳ FP-1E3		1	3753	3473	587
Sample 20	blood plasma		3827	3550	601
↳ FP-1E4		1	3827	3550	601
Sample 21	blood plasma		3221	2967	521
↳ FP-2A1		1	3221	2967	521
Sample 22	blood plasma		3326	3058	529
↳ FP-2A2		1	3326	3058	529
Sample 23	blood plasma		3361	3096	550
↳ FP-2A3		1	3361	3096	550
Sample 24	blood plasma		3309	3052	523
↳ FP-2A4		1	3309	3052	523
Sample 25	blood plasma		3366	3117	526
↳ FP-2B1		1	3366	3117	526
Sample 26	blood plasma		3278	3029	504
↳ FP-2B2		1	3278	3029	504
Sample 27	blood plasma		3254	2983	529
↳ FP-2B3		1	3254	2983	529
Sample 28	blood plasma		3201	2955	495
↳ FP-2B4		1	3201	2955	495
Sample 29	blood plasma		3174	2936	519
↳ FP-2C1		1	3174	2936	519
Sample 30	blood plasma		3358	3068	528
↳ FP-2C2		1	3358	3068	528
Sample 31	blood plasma		3320	3062	528
↳ FP-2C3		1	3320	3062	528
Sample 32	blood plasma		3731	3453	589
↳ FP-2C4		1	3731	3453	589
Sample 33	blood plasma		3543	3302	526
↳ FP-2D1		1	3543	3302	526
Sample 34	blood plasma		3539	3290	538
↳ FP-2D2		1	3539	3290	538
Sample 35	blood plasma		3375	3147	507
↳ FP-2D3		1	3375	3147	507
Sample 36	blood plasma		3476	3228	531
↳ FP-2D4		1	3476	3228	531
Sample 37	blood plasma		3642	3373	529
↳ FP-2E1		1	3642	3373	529
Sample 38	blood plasma		3635	3339	549
↳ FP-2E2		1	3635	3339	549
Sample 39	blood plasma		3565	3294	514
↳ FP-2E3		1	3565	3294	514
Sample 40	blood plasma		3553	3293	529
↳ FP-2E4		1	3553	3293	529
Sample 41	blood plasma		3392	3127	513
↳ FP-3A1		1	3392	3127	513
Sample 42	blood plasma		3548	3281	528
↳ FP-3A2		1	3548	3281	528
Sample 43	blood plasma		3523	3260	520
↳ FP-3A3		1	3523	3260	520
Sample 44	blood plasma		3574	3291	523
↳ FP-3A4		1	3574	3291	523
Sample 45	blood plasma		3520	3263	502
↳ FP-3B1		1	3520	3263	502
Sample 46	blood plasma		3464	3214	522
↳ FP-3B2		1	3464	3214	522
Sample 47	blood plasma		3544	3290	512
↳ FP-3B3		1	3544	3290	512
Sample 48	blood plasma		3418	3161	499
↳ FP-3B4		1	3418	3161	499
Sample 49	blood plasma		3643	3342	526
↳ FP-3C1		1	3643	3342	526
Sample 50	blood plasma		3496	3243	511
↳ FP-3C2		1	3496	3243	511
Sample 51	blood plasma		3496	3248	499
↳ FP-3C3		1	3496	3248	499
Sample 52	blood plasma		3554	3299	505
↳ FP-3C4		1	3554	3299	505
Sample 53	blood plasma		3532	3251	508
↳ FP-3D1		1	3532	3251	508
Sample 54	blood plasma		3588	3311	537
↳ FP-3D2		1	3588	3311	537
Sample 55	blood plasma		3560	3317	496
↳ FP-3D3		1	3560	3317	496
Sample 56	blood plasma		3524	3271	507
↳ FP-3D4		1	3524	3271	507
Sample 57	blood plasma		3623	3338	535
↳ FP-3E1		1	3623	3338	535
Sample 58	blood plasma		3727	3432	540
↳ FP-3E2		1	3727	3432	540
Sample 59	blood plasma		3650	3384	534
↳ FP-3E3		1	3650	3384	534
Sample 60	blood plasma		3776	3476	548
↳ FP-3E4		1	3776	3476	548
Sample 61	blood plasma		3628	3346	525
↳ FP-4A1		1	3628	3346	525
Sample 62	blood plasma		3557	3273	538
↳ FP-4A2		1	3557	3273	538
Sample 63	blood plasma		3519	3268	511
↳ FP-4A3		1	3519	3268	511
Sample 64	blood plasma		3485	3229	520
↳ FP-4A4		1	3485	3229	520
Sample 65	blood plasma		3392	3140	492
↳ FP-4B1		1	3392	3140	492
Sample 66	blood plasma		3567	3285	539
↳ FP-4B2		1	3567	3285	539
Sample 67	blood plasma		3414	3163	509
↳ FP-4B3		1	3414	3163	509
Sample 68	blood plasma		3687	3389	546
↳ FP-4B4		1	3687	3389	546
Sample 69	blood plasma		3444	3181	508
↳ FP-4C1		1	3444	3181	508
Sample 70	blood plasma		3357	3107	481
↳ FP-4C2		1	3357	3107	481
Sample 71	blood plasma		3550	3276	528
↳ FP-4C3		1	3550	3276	528
Sample 72	blood plasma		3548	3287	528
↳ FP-4C4		1	3548	3287	528
Sample 73	blood plasma		2950	2702	445
↳ FP-4D1		1	2950	2702	445
Sample 74	blood plasma		3547	3272	535
↳ FP-4D2		1	3547	3272	535
Sample 75	blood plasma		3577	3295	526
↳ FP-4D3		1	3577	3295	526
Sample 76	blood plasma		3563	3286	522
↳ FP-4D4		1	3563	3286	522
Sample 77	blood plasma		3554	3282	524
↳ FP-4E1		1	3554	3282	524
Sample 78	blood plasma		3462	3199	517
↳ FP-4E2		1	3462	3199	517
Sample 79	blood plasma		3528	3271	528
↳ FP-4E3		1	3528	3271	528
Sample 80	blood plasma		3598	3326	520
↳ FP-4E4		1	3598	3326	520
Sample 81	blood plasma		3947	3636	653
↳ MP-1A1		1	3947	3636	653
Sample 82	blood plasma		3619	3352	573
↳ MP-1A2		1	3619	3352	573
Sample 83	blood plasma		3835	3540	622
↳ MP-1A3		1	3835	3540	622
Sample 84	blood plasma		3828	3566	584
↳ MP-1A4		1	3828	3566	584
Sample 85	blood plasma		3949	3618	593
↳ MP-1B1		1	3949	3618	593
Sample 86	blood plasma		3759	3484	588
↳ MP-1B2		1	3759	3484	588
Sample 87	blood plasma		3757	3494	588
↳ MP-1B3		1	3757	3494	588
Sample 88	blood plasma		3663	3385	583
↳ MP-1B4		1	3663	3385	583
Sample 89	blood plasma		3813	3547	587
↳ MP-1C1		1	3813	3547	587
Sample 90	blood plasma		3846	3556	588
↳ MP-1C2		1	3846	3556	588
Sample 91	blood plasma		3914	3623	612
↳ MP-1C3		1	3914	3623	612
Sample 92	blood plasma		3748	3474	574
↳ MP-1C4		1	3748	3474	574
Sample 93	blood plasma		3570	3314	550
↳ MP-1D1		1	3570	3314	550
Sample 94	blood plasma		3788	3495	578
↳ MP-1D2		1	3788	3495	578
Sample 95	blood plasma		3814	3553	595
↳ MP-1D3		1	3814	3553	595
Sample 96	blood plasma		3764	3470	580
↳ MP-1D4		1	3764	3470	580
Sample 97	blood plasma		3935	3636	625
↳ MP-1E1		1	3935	3636	625
Sample 98	blood plasma		3692	3392	578
↳ MP-1E2		1	3692	3392	578
Sample 99	blood plasma		3821	3533	588
↳ MP-1E3		1	3821	3533	588
Sample 100	blood plasma		3663	3394	589
↳ MP-1E4		1	3663	3394	589
Sample 101	blood plasma		3787	3509	607
↳ MP-2A1		1	3787	3509	607
Sample 102	blood plasma		3789	3494	592
↳ MP-2A2		1	3789	3494	592
Sample 103	blood plasma		3620	3353	553
↳ MP-2A3		1	3620	3353	553
Sample 104	blood plasma		3825	3493	605
↳ MP-2A4		1	3825	3493	605
Sample 105	blood plasma		3286	3026	532
↳ MP-2B1		1	3286	3026	532
Sample 106	blood plasma		3194	2948	504
↳ MP-2B2		1	3194	2948	504
Sample 107	blood plasma		3087	2846	489
↳ MP-2B3		1	3087	2846	489
Sample 108	blood plasma		3276	2994	528
↳ MP-2B4		1	3276	2994	528
Sample 109	blood plasma		3314	3047	561
↳ MP-2C1		1	3314	3047	561
Sample 110	blood plasma		3134	2900	496
↳ MP-2C2		1	3134	2900	496
Sample 111	blood plasma		3270	3006	521
↳ MP-2C3		1	3270	3006	521
Sample 112	blood plasma		3302	3037	529
↳ MP-2C4		1	3302	3037	529
Sample 113	blood plasma		3651	3390	566
↳ MP-2D1		1	3651	3390	566
Sample 114	blood plasma		3815	3504	603
↳ MP-2D2		1	3815	3504	603
Sample 115	blood plasma		3587	3317	551
↳ MP-2D3		1	3587	3317	551
Sample 116	blood plasma		3580	3328	539
↳ MP-2D4		1	3580	3328	539
Sample 117	blood plasma		3524	3269	555
↳ MP-2E1		1	3524	3269	555
Sample 118	blood plasma		3335	3087	504
↳ MP-2E2		1	3335	3087	504
Sample 119	blood plasma		3431	3192	506
↳ MP-2E3		1	3431	3192	506
Sample 120	blood plasma		3411	3176	497
↳ MP-2E4		1	3411	3176	497
Sample 121	blood plasma		3774	3472	568
↳ MP-3A1		1	3774	3472	568
Sample 122	blood plasma		3728	3443	578
↳ MP-3A2		1	3728	3443	578
Sample 123	blood plasma		3523	3243	533
↳ MP-3A3		1	3523	3243	533
Sample 124	blood plasma		3338	3085	506
↳ MP-3A4		1	3338	3085	506
Sample 125	blood plasma		3484	3214	525
↳ MP-3B1		1	3484	3214	525
Sample 126	blood plasma		3381	3133	498
↳ MP-3B2		1	3381	3133	498
Sample 127	blood plasma		3486	3213	533
↳ MP-3B3		1	3486	3213	533
Sample 128	blood plasma		3159	2919	488
↳ MP-3B4		1	3159	2919	488
Sample 129	blood plasma		3556	3310	510
↳ MP-3C1		1	3556	3310	510
Sample 130	blood plasma		3531	3262	508
↳ MP-3C2		1	3531	3262	508
Sample 131	blood plasma		3567	3315	510
↳ MP-3C3		1	3567	3315	510
Sample 132	blood plasma		3556	3293	511
↳ MP-3C4		1	3556	3293	511
Sample 133	blood plasma		3708	3404	547
↳ MP-3D1		1	3708	3404	547
Sample 134	blood plasma		3486	3237	502
↳ MP-3D2		1	3486	3237	502
Sample 135	blood plasma		3545	3280	513
↳ MP-3D3		1	3545	3280	513
Sample 136	blood plasma		3608	3324	526
↳ MP-3D4		1	3608	3324	526
Sample 137	blood plasma		3715	3411	545
↳ MP-3E1		1	3715	3411	545
Sample 138	blood plasma		3654	3388	536
↳ MP-3E2		1	3654	3388	536
Sample 139	blood plasma		3569	3312	520
↳ MP-3E3		1	3569	3312	520
Sample 140	blood plasma		3514	3261	511
↳ MP-3E4		1	3514	3261	511
Sample 141	blood plasma		546	446	136
↳ MP-4A1		1	546	446	136
Sample 142	blood plasma		3609	3323	542
↳ MP-4A2		1	3609	3323	542
Sample 143	blood plasma		3579	3283	528
↳ MP-4A3		1	3579	3283	528
Sample 144	blood plasma		3554	3278	513
↳ MP-4A4		1	3554	3278	513
Sample 145	blood plasma		3562	3270	540
↳ MP-4B1		1	3562	3270	540
Sample 146	blood plasma		3553	3291	503
↳ MP-4B2		1	3553	3291	503
Sample 147	blood plasma		3440	3202	503
↳ MP-4B3		1	3440	3202	503
Sample 148	blood plasma		3460	3225	505
↳ MP-4B4		1	3460	3225	505
Sample 149	blood plasma		3659	3368	555
↳ MP-4C1		1	3659	3368	555
Sample 150	blood plasma		3437	3152	524
↳ MP-4C2		1	3437	3152	524
Sample 151	blood plasma		3484	3218	542
↳ MP-4C3		1	3484	3218	542
Sample 152	blood plasma		3348	3082	524
↳ MP-4C4		1	3348	3082	524
Sample 153	blood plasma		3669	3398	536
↳ MP-4D1		1	3669	3398	536
Sample 154	blood plasma		3552	3304	506
↳ MP-4D2		1	3552	3304	506
Sample 155	blood plasma		3506	3235	542
↳ MP-4D3		1	3506	3235	542
Sample 156	blood plasma		2876	2628	449
↳ MP-4D4		1	2876	2628	449
Sample 157	blood plasma		3342	3087	515
↳ MP-4E1		1	3342	3087	515
Sample 158	blood plasma		3450	3174	514
↳ MP-4E2		1	3450	3174	514
Sample 159	blood plasma		3640	3330	534
↳ MP-4E3		1	3640	3330	534
Sample 160	blood plasma		3585	3289	540
↳ MP-4E4		1	3585	3289	540

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: pipeline_result_statistics_table

Sort	Column	Description	ID
\|\|	Condition	Condition	`Condition`
\|\|	Fraction	Fraction Identifier	`Fraction`
\|\|	#Peptide IDs	The number of identified PSMs in the pipeline	`Peptide_Num`
\|\|	#Unambiguous Peptide IDs	The number of unique peptides in the pipeline. Those that match only one protein in the provided database	`Unique_Peptide_Num`
\|\|	#Modified Peptide IDs	Number of modified identified peptides in the pipeline	`Modified_Peptide_Num`
\|\|	#Protein (group) IDs	The number of identified protein(group)s in the pipeline	`Protein_Num`

Identification Summary

Number of Peptides identified Per Protein

This plot shows the number of peptides per protein in quantms pipeline final result

This statistic is extracted from the out_msstats file. Proteins supported by more peptide identifications can constitute more confident results.

Created with MultiQC

ProteinGroups Count

Number of protein groups per raw file.

Based on statistics calculated from mzTab, mzIdentML (mzid), DIA-NN report files, FragPipe psm.tsv or QPX pg.parquet.

Created with MultiQC

Peptide ID Count

Number of unique (i.e. not counted twice) peptide sequences including modifications per Raw file.

Based on statistics calculated from mzTab, mzIdentML (mzid), DIA-NN report files, or FragPipe psm.tsv.

Created with MultiQC

Peptide Length Distribution

Peptide length distribution per Run.

Peptide length distribution.
FragPipe: psm.tsv ('Peptide Length': number of residues in the peptide sequence).
MaxQuant: evidence.txt ('Length': the length of the sequence stored in the column 'Sequence').
DIA-NN: report.tsv (the length of the 'Stripped.Sequence').
quantms: *.mzTab (the length of sequence).

Created with MultiQC

Quantification Analysis

Peptides Quantification Table (Showing 500 rows)

This plot shows the quantification information of peptides in the final result (mainly the mzTab file).

The quantification information of peptides is obtained from the MSstats input file. The table shows the quantitative level and distribution of peptides in different study variables, run and peptiforms. The distribution show all the intensity values in a bar plot above and below the average intensity for all the fractions, runs and peptiforms. * BestSearchScore: It is equal to 1 - min(Q.Value) for DIA datasets. Then it is equal to 1 - min(best_search_engine_score[1]), which is from best_search_engine_score[1] column in mzTab peptide table for DDA datasets. * Average Intensity: Average intensity of each peptide sequence across all conditions with NA=0 or NA ignored. * Peptide intensity in each condition (Eg. `CT=Mixture;CN=UPS1;QY=0.1fmol`): Summarize intensity of fractions, and then mean intensity in technical replicates/biological replicates separately.

Showing ⁵⁰⁰/₅₀₀ rows and ⁵/₅ columns.

PeptideID	Protein Name	Peptide Sequence	Best Search Score	Average Intensity	blood plasma
1	IPSP_HUMAN	AAAATGTLFTFR	1.0000	7.2108	7.2108
2	TFR1_HUMAN	AAAEVAGQFVLK	1.0000	6.2663	6.2663
3	TLN1_HUMAN	AAAFEEQENETVVVK	0.9928	6.6869	6.6869
4	AOC3_HUMAN	AAALAHLDR	1.0000	5.5533	5.5533
5	POSTN_HUMAN	AAALTSDLLEALGR	1.0000	6.0312	6.0312
6	ANAG_HUMAN	AAAVSEAEADFYEQNSR	1.0000	5.0776	5.0776
7	TTHY_HUMAN	AADDTWEPFASGK	1.0000	9.7129	9.7129
8	FA5_HUMAN	AADLEQQAVFAVFDENK	1.0000	7.1805	7.1805
9	PHB1_HUMAN	AAELLANSLATAGDGLLELR	1.0000	5.8910	5.8910
10	1433E_HUMAN	AAFDDALAELDTLSEESYK	1.0000	5.6967	5.6967
11	COMD3_HUMAN	AAFQSLLDAQADEAVLDHPDLK	0.9959	6.9196	6.9196
12	PTPRF_HUMAN	AAGTEGPFQEVDGVATTR	1.0000	5.8582	5.8582
13	NCAM1_HUMAN	AAHFVFR	0.9997	6.0236	6.0236
14	APOB_HUMAN	AALGKLPQQANDYLNSFNWER	1.0000	8.2900	8.2900
15	ACE_HUMAN	AALPAQELEEYNK	1.0000	5.6296	5.6296
16	LRP1_HUMAN	AALSGANVLTLLEK	1.0000	5.7929	5.7929
17	ITIH1_HUMAN	AALSGENAGLVR	1.0000	9.1727	9.1727
18	APOB_HUMAN	AALTELSLGSAYQAMLLGVDSK	1.0000	7.5942	7.5942
19	ANGT_HUMAN	AAMVGMLANFLGFR	1.0000	6.5836	6.5836
20	HYOU1_HUMAN	AANSLEAFLFETQDK	1.0000	6.3650	6.3650
21	COR1A_HUMAN	AAPEASGTPSSDAVSR	1.0000	4.9994	4.9994
22	QSOX1_HUMAN	AAPGQEPPEHMAELQR	1.0000	6.9875	6.9875
23	CO6A3_HUMAN	AAPLQGMLPGLLAPLR	1.0000	5.4851	5.4851
24	IGLC7_HUMAN	AAPSVTLFPPSSEELQANK	1.0000	8.2159	8.2159
25	LCAT_HUMAN	AAPYDWR	0.9997	7.1839	7.1839
26	FCG2A_HUMAN	AAQFEPPGR	1.0000	6.2442	6.2442
27	A2MG_HUMAN	AAQVTLQSSGTFSSK	1.0000	7.2145	7.2145
28	CO7_HUMAN	AASGTQNNVLR	1.0000	6.1424	6.1424
29	APOB_HUMAN	AASGTTGTYQEWK	1.0000	8.5080	8.5080
30	APOB_HUMAN	AASGTTGTYQEWKDK	1.0000	6.8078	6.8078
31	PHB1_HUMAN	AATFGLLLDDVSLTHLTFGK	0.9989	6.5604	6.5604
32	APOE_HUMAN	AATVGSLAGQPLQER	1.0000	8.5561	8.5561
33	HEM2_HUMAN	AAVLEAMTAFR	1.0000	5.8607	5.8607
34	ENOA_HUMAN	AAVPSGASTGLYEALELR	1.0000	6.5722	6.5722
35	CO3_HUMAN	AAVYHHFLSDGVR	1.0000	9.3946	9.3946
36	CO3_HUMAN	AAVYHHFLSDGVRK	1.0000	7.6217	7.6217
37	CONTAM_HBA_HUMAN;HBA_HUMAN	AAWGKVGAHAGEYGAEALER	1.0000	6.7950	6.7950
38	ALDOA_HUMAN	ADDGRPFPQVLK	1.0000	6.6966	6.6966
39	ALBU_HUMAN;CONTAM_ALBU_HUMAN	ADDKETCFAEEGK	1.0000	6.8517	6.8517
40	CONTAM_PRDX1_HUMAN;PRDX1_HUMAN	ADEGLSFR	0.9948	5.8632	5.8632
41	PCSK9_HUMAN	ADEYQPPDGGSLVEVYLLDTSLQSDHRELEGR	1.0000	5.3807	5.3807
42	B3AT_HUMAN	ADFLEQPVLGFVR	1.0000	6.2023	6.2023
43	CAH1_HUMAN;CONTAM_CAH1_HUMAN	ADGLAVLGVLMK	1.0000	7.6744	7.6744
44	CD109_HUMAN	ADGNQLTLEER	1.0000	5.8432	5.8432
45	CO4B_HUMAN	ADGSYAAWLSR	1.0000	8.7034	8.7034
46	ASGR2_HUMAN	ADHDALLFHLK	1.0000	5.8520	5.8520
47	BGH3_HUMAN	ADHHATNGVVHLLDK	1.0000	6.6119	6.6119
48	FA5_HUMAN	ADKPLSLHPQGLR	1.0000	6.7216	6.7216
49	CONTAM_K1C17_HUMAN;K1C17_HUMAN	ADLEMQLENLK	0.9932	6.9798	6.9798
50	CONTAM_K1C14_HUMAN;K1C14_HUMAN	ADLEMQLESLKEELAYLK	1.0000	6.6003	6.6003
51	CONTAM_K1C10_HUMAN;K1C10_HUMAN	ADLEMQLESLTEELAYLKK	1.0000	7.0612	7.0612
52	HRG_HUMAN	ADLFYDVEALDLESPK	1.0000	9.0542	9.0542
53	CO3_HUMAN	ADLGCTPGSGKDYAGVFSDAGLTFTSSSGQQTAQR	1.0000	6.5770	6.5770
54	4F2_HUMAN	ADLLLSTQPGREEGSPLELER	1.0000	6.6595	6.6595
55	AACT_HUMAN	ADLSGLTGAR	1.0000	9.5675	9.5675
56	CONTAM_CO5_HUMAN	ADNFLLENTLPAQSTFTLALSAYALSLGDKTHPQFR	1.0000	5.6445	5.6445
57	TRFE_HUMAN;trFE_HUMAN	ADRDQYELLCLDNTR	1.0000	6.5437	6.5437
58	ANGT_HUMAN	ADSQAQLLLSTVVGVFTAPGLHLK	1.0000	8.3398	8.3398
59	APOB_HUMAN	ADSVVDLLSYNVQGSGETTYDHK	1.0000	8.8701	8.8701
60	CONTAM_K2C6A_HUMAN;K2C6A_HUMAN	ADTLTDELNFLR	1.0000	6.8271	6.8271
61	CATA_HUMAN;CONTAM_CATA_HUMAN	ADVLTTGAGNPVGDK	1.0000	6.4464	6.4464
62	ITIH1_HUMAN	ADVQAHGEGQEFSLTCLVDEEEMK	1.0000	6.3936	6.3936
63	CONTAM_K2C78_HUMAN;K2C78_HUMAN	AEAEALYQTK	1.0000	6.3485	6.3485
64	K2C1_HUMAN	AEAESLYQSK	1.0000	6.5454	6.5454
65	K2C1_HUMAN	AEAESLYQSKYEELQLTAGR	1.0000	6.4701	6.4701
66	CONTAM_K2C6A_HUMAN;K2C6A_HUMAN	AEAESWYQTK	1.0000	5.9739	5.9739
67	FLNA_HUMAN	AEAGVPAEFSLWTR	1.0000	6.5172	6.5172
68	ITIH4_HUMAN	AEAQAQYSAAVAK	1.0000	8.4744	8.4744
69	CO8G_HUMAN	AEATTLHVAPQGTAMAVSTFR	1.0000	8.0774	8.0774
70	ITIH2_HUMAN	AEDHFSVLDFNQNLR	1.0000	8.6258	8.6258
71	CO3_HUMAN	AEDLVGKSLYVSATVLLHSGSDMVQAER	1.0000	7.1191	7.1191
72	CERU_HUMAN	AEEEHLGLLGPQLHADVGDK	1.0000	8.1998	8.1998
73	GDIR1_HUMAN	AEEYEFLTPVEEAPK	0.9967	5.2425	5.2425
74	ALBU_HUMAN;CONTAM_ALBU_HUMAN	AEFAEVSK	1.0000	8.6459	8.6459
75	ALBU_HUMAN;CONTAM_ALBU_HUMAN	AEFAEVSKLVTDLTK	1.0000	6.8759	6.8759
76	CO4B_HUMAN	AEFQDALEK	1.0000	9.3462	9.3462
77	CO4B_HUMAN	AEFQDALEKLNMGLTDLQGLR	1.0000	5.9128	5.9128
78	APOB_HUMAN	AEFTGRHDAHLNGK	1.0000	6.5016	6.5016
79	CADH1_HUMAN	AELDREDFEHVK	1.0000	6.6300	6.6300
80	LYAM1_HUMAN	AELEYLEK	1.0000	7.6510	7.6510
81	PGBM_HUMAN	AELLVTEAPSKPLTVTVEEQR	1.0000	5.9614	5.9614
82	APOA1_HUMAN	AELQEGAR	1.0000	6.3039	6.3039
83	CO4B_HUMAN	AEMADQAAAWLTR	1.0000	8.5408	8.5408
84	CO4A_HUMAN	AEMADQASAWLTR	1.0000	7.6600	7.6600
85	APOB_HUMAN	AEPLAFTFSHDYK	1.0000	8.7784	8.7784
86	APOB_HUMAN	AEPLAFTFSHDYKGSTSHHLVSR	1.0000	6.4098	6.4098
87	BASP1_HUMAN	AEPPKAPEQEQAAPGPAAGGEAPK	0.9991	5.4690	5.4690
88	AFAM_HUMAN	AESPEVCFNEESPK	1.0000	6.3398	6.3398
89	CERU_HUMAN	AETGDKVYVHLK	0.9997	5.6958	5.6958
90	FA5_HUMAN	AEVDDVLQVR	1.0000	7.6933	7.6933
91	APOA4_HUMAN	AEVSADQVATVMWDYFSQLSNNAK	1.0000	6.3403	6.3403
92	TSP4_HUMAN	AFAGPSQKPETLELR	1.0000	5.1947	5.1947
93	CPSM_HUMAN	AFALSGPFNVQFLVK	0.9997	6.5229	6.5229
94	MET_HUMAN	AFFMLDGLLSK	1.0000	4.8817	4.8817
95	FLNA_HUMAN	AFGPGLQGGSAGSPAR	1.0000	5.0704	5.0704
96	NAR3_HUMAN	AFHFYLTR	0.9980	4.9437	4.9437
97	ALBU_HUMAN;CONTAM_ALBU_HUMAN	AFKAWAVAR	1.0000	5.5635	5.5635
98	ANT3_HUMAN;CONTAM_ANT3_HUMAN	AFLEVNEEGSEAAASTAVVLAGR	1.0000	8.5756	8.5756
99	NID1_HUMAN	AFLHVPAK	1.0000	5.5542	5.5542
100	APOM_HUMAN	AFLLTPR	1.0000	8.3809	8.3809
101	AMBP_HUMAN	AFLQLWAFDAVK	1.0000	8.8388	8.8388
102	COFA1_HUMAN	AFLSSHLQDLSTLVR	1.0000	4.7497	4.7497
103	CD14_HUMAN	AFPALTSLDLSDNPGLGER	1.0000	7.5450	7.5450
104	A2MG_HUMAN	AFQPFFVELTMPYSVLR	1.0000	6.4942	6.4942
105	A2MG_HUMAN	AFQPFFVELTMPYSVLRGEAFTLK	0.9914	7.1517	7.1517
106	COMP_HUMAN	AFQTVVLDPEGDAQLDPNWVVLNQGR	1.0000	6.8475	6.8475
107	MMP2_HUMAN	AFQVWSDVTPLR	1.0000	6.6754	6.6754
108	CO3_HUMAN	AFSDRNTLLLYLDK	1.0000	8.1567	8.1567
109	PEPD_HUMAN	AFTPFSGPK	1.0000	6.3768	6.3768
110	TFR1_HUMAN	AFTYLNLDK	1.0000	6.8444	6.8444
111	TBA4A_HUMAN	AFVHWYVGEGMEEGEFSEAR	1.0000	6.0739	6.0739
112	VWF_HUMAN	AFVLSSVDELEQQR	1.0000	5.6314	5.6314
113	VWF_HUMAN	AFVVDMMER	0.9995	6.3680	6.3680
114	ALS_HUMAN	AFWLDVSHNR	1.0000	7.8156	7.8156
115	ALS_HUMAN	AFWLDVSHNRLEALPNSLLAPLGR	1.0000	6.7698	6.7698
116	CATA_HUMAN;CONTAM_CATA_HUMAN	AFYVNVLNEEQR	1.0000	6.7367	6.7367
117	DOPO_HUMAN	AFYYPEEAGLAFGGPGSSR	1.0000	6.7519	6.7519
118	CONTAM_GELS_HUMAN;GELS_HUMAN	AGALNSNDAFVLK	1.0000	9.2078	9.2078
119	PLTP_HUMAN	AGALQLLLVGDK	1.0000	6.0451	6.0451
120	PLTP_HUMAN	AGALQLLLVGDKVPHDLDMLLR	1.0000	6.2237	6.2237
121	URP2_HUMAN	AGDALWLR	1.0000	6.6400	6.6400
122	TENX_HUMAN	AGDEAVFAQYDSFHVDSAAEYYR	1.0000	6.6344	6.6344
123	CO3_HUMAN	AGDFLEANYMNLQR	1.0000	9.5421	9.5421
124	RARR2_HUMAN	AGEDPHSFYFPGQFAFSK	1.0000	6.5359	6.5359
125	ITIH2_HUMAN	AGELEVFNGYFVHFFAPDNLDPLPK	1.0000	8.1851	8.1851
126	NCAM1_HUMAN	AGEQDATLHLK	1.0000	6.5715	6.5715
127	ZA2G_HUMAN	AGEVQEPELR	1.0000	8.9546	8.9546
128	ACTS_HUMAN	AGFAGDDAPR	1.0000	6.7093	6.7093
129	ITIH4_HUMAN	AGFSWLEVTFK	1.0000	8.5788	8.5788
130	ITIH4_HUMAN	AGFSWLEVTFKNPLVWVHASPEHVVVTR	1.0000	6.7832	6.7832
131	CPN2_HUMAN	AGGSWDLAVQER	1.0000	8.6419	8.6419
132	APOB_HUMAN	AGHLAWTSSGK	1.0000	7.0710	7.0710
133	CONTAM_GELS_HUMAN;GELS_HUMAN	AGKEPGLQLWR	1.0000	8.0948	8.0948
134	SODE_HUMAN	AGLAASLAGPHSLVGR	1.0000	5.4677	5.4677
135	PGRP2_HUMAN	AGLLRPDYALLGHR	1.0000	8.2008	8.2008
136	H2A1B_HUMAN;H2A1C_HUMAN;H2A1D_HUMAN;H2A1H_HUMAN;H2A1J_HUMAN;H2A1_HUMAN;H2A2A_HUMAN;H2A2C_HUMAN;H2A3_HUMAN;H2AJ_HUMAN	AGLQFPVGR	1.0000	6.3065	6.3065
137	ECHB_HUMAN	AGLTMNDLDAFEFHEAFSGQLLANFK	1.0000	6.2620	6.2620
138	FA5_HUMAN	AGMQTPFLLMDR	1.0000	7.1752	7.1752
139	FLNA_HUMAN	AGNNMLLVGVHGPR	1.0000	5.1364	5.1364
140	PTPRJ_HUMAN	AGSPTAPVHDESLVGPVDPSSGQQSR	1.0000	6.8199	6.8199
141	APOA2_HUMAN	AGTELVNFLSYFVELGTQPATQ	1.0000	8.4653	8.4653
142	ENPP2_HUMAN	AGTFFWSVVLPHER	1.0000	5.5865	5.5865
143	TENA_HUMAN	AGTPYTVTLHGEVR	1.0000	5.0844	5.0844
144	ACTN1_HUMAN	AGTQLENLEEDFRDGLK	1.0000	6.1496	6.1496
145	IGLC2_HUMAN;IGLC3_HUMAN	AGVETTTPSK	0.9914	5.7921	5.7921
146	FCGBP_HUMAN	AGVQVWLGANGK	1.0000	6.5342	6.5342
147	WDR1_HUMAN	AHDGGLYALSWSPDSTHLLSASGDK	1.0000	5.3572	5.3572
148	STAB1_HUMAN	AHFLQGALFEEELAR	0.9995	4.7739	4.7739
149	AMYP_HUMAN	AHFSLSNSAEDPFLALHAESKL	1.0000	5.5602	5.5602
150	QSOX1_HUMAN	AHFSPSNLLLDFPAAGSAAR	1.0000	7.5298	7.5298
151	APOB_HUMAN	AHLDLAGSLEGHLR	1.0000	8.6302	8.6302
152	VWF_HUMAN	AHLLSLVDVMQR	1.0000	6.7932	6.7932
153	PCSK9_HUMAN	AHNAFGGEGVYALAR	1.0000	6.0985	6.0985
154	CNTN1_HUMAN	AHSDGGDGVVSQVK	1.0000	5.5653	5.5653
155	PTPRF_HUMAN	AHTDVGPGPESSPVLVR	1.0000	5.2753	5.2753
156	ITIH2_HUMAN	AHVSFKPTVAQQR	1.0000	7.3506	7.3506
157	ANGL6_HUMAN	AHYDGFSLEPESDHYR	1.0000	5.8099	5.8099
158	FETUA_HUMAN	AHYDLRHTFMGVVSLGSPSGEVSHPR	1.0000	6.1370	6.1370
159	FIBB_HUMAN	AHYGGFTVQNEANK	1.0000	7.9109	7.9109
160	FIBB_HUMAN	AHYGGFTVQNEANKYQLSVNK	1.0000	8.0237	8.0237
161	CO6_HUMAN	AKDLHLSDVFLK	0.9971	5.0642	5.0642
162	ATRN_HUMAN	AKEQYAVVGHSAHLVTLK	1.0000	6.6133	6.6133
163	BIP_HUMAN	AKFEELNMDLFR	1.0000	6.6716	6.6716
164	APOA4_HUMAN	AKLDQNVEELK	1.0000	8.6036	8.6036
165	APOE_HUMAN	AKLEEQAQQLR	1.0000	8.2586	8.2586
166	CA2D1_HUMAN	AKLEETLTQAR	1.0000	6.1989	6.1989
167	PPAC_HUMAN	AKLELLGSYDPQK	0.9994	7.9181	7.9181
168	VTDB_HUMAN	AKLPDATPTELAK	1.0000	8.9072	8.9072
169	CO8A_HUMAN	AKMESLGLTSR	1.0000	6.7187	6.7187
170	APOA1_HUMAN	AKPALEDLR	1.0000	9.8133	9.8133
171	APOA1_HUMAN	AKPALEDLRQGLLPVLESFK	1.0000	7.5507	7.5507
172	APOB_HUMAN	AKVHELLER	1.0000	6.3540	6.3540
173	APOA1_HUMAN	AKVQPYLDDFQK	1.0000	9.0544	9.0544
174	AACT_HUMAN	AKWEMPFDPQDTHQSR	1.0000	8.9966	8.9966
175	IPSP_HUMAN	AKWETSFNHK	1.0000	6.5810	6.5810
176	TRFE_HUMAN;trFE_HUMAN	ALAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSK	1.0000	6.7056	6.7056
177	VINC_HUMAN	ALASQLQDSLK	1.0000	6.3302	6.3302
178	CONTAM_CO5_HUMAN	ALAYSSLSQSYLYLDWTDNHK	1.0000	7.7247	7.7247
179	CYTC_HUMAN	ALDFAVGEYNK	1.0000	8.3804	8.3804
180	TLN1_HUMAN	ALDGAFTEENR	1.0000	5.6444	5.6444
181	SBSN_HUMAN	ALDGLNSGLTHAGR	1.0000	4.8139	4.8139
182	HRG_HUMAN	ALDLLNKR	1.0000	8.2090	8.2090
183	S10A4_HUMAN	ALDVMVSTFHK	1.0000	5.4508	5.4508
184	TLN1_HUMAN	ALDYYMLR	0.9938	5.8624	5.8624
185	CO9_HUMAN	ALEDYLNEFSVR	1.0000	8.6007	8.6007
186	CO9_HUMAN	ALEDYLNEFSVRK	1.0000	6.4835	6.4835
187	CONTAM_K1C16_HUMAN;K1C16_HUMAN	ALEEANADLEVK	1.0000	7.2656	7.2656
188	CONTAM_K1C17_HUMAN;K1C17_HUMAN	ALEEANTELEVK	1.0000	6.6607	6.6607
189	CONTAM_K1C10_HUMAN;K1C10_HUMAN	ALEESNYELEGK	1.0000	7.6125	7.6125
190	CONTAM_K1C10_HUMAN;K1C10_HUMAN	ALEESNYELEGKLK	0.9997	4.0827	4.0827
191	PHLD_HUMAN	ALEFLQLHNGR	1.0000	7.6514	7.6514
192	NID1_HUMAN	ALEGLQYPFAVTSYGK	1.0000	5.8739	5.8739
193	CO4B_HUMAN	ALELLQEEDLLDEDDLPVR	1.0000	8.3638	8.3638
194	GGCT_HUMAN	ALEPNDYTGK	0.9951	6.5954	6.5954
195	AMPN_HUMAN	ALEQALEK	1.0000	6.1920	6.1920
196	CNDP1_HUMAN	ALEQDLPVNLK	1.0000	7.7518	7.7518
197	ENTRAP_IMB1_HUMAN	ALEQLEAK	0.9936	5.9482	5.9482
198	PGK1_HUMAN	ALESPERPFLALLGGAK	1.0000	6.3799	6.3799
199	DPEP2_HUMAN	ALEVSQAPVLFSHSAAR	1.0000	6.7023	6.7023
200	HV226_HUMAN	ALEWLAHLFSNDEK	1.0000	6.4509	6.4509
201	HV70D_HUMAN	ALEWLAR	1.0000	6.7009	6.7009
202	COR1C_HUMAN	ALFLADGNVFTTGFSR	1.0000	5.4806	5.4806
203	CD166_HUMAN	ALFLETEQLK	1.0000	6.2724	6.2724
204	ITIH2_HUMAN	ALFLLNEANNLGLLDPNSVSLLLLVSDGDPTVGELK	1.0000	5.7504	5.7504
205	CONTAM_Q9TRI1_BOVIN	ALFLLNEANNLGMLDPNSVSLLLLVSDGDPTVGELK	1.0000	5.8300	5.8300
206	CFAB_HUMAN	ALFVSEEEK	1.0000	9.1747	9.1747
207	CFAB_HUMAN	ALFVSEEEKK	1.0000	8.5470	8.5470
208	FETUB_HUMAN	ALFYMNNPSR	1.0000	7.3069	7.3069
209	TLN1_HUMAN	ALGDLLSATK	1.0000	5.6823	5.6823
210	COL11_HUMAN	ALGEMDNQVSQLTSELK	1.0000	6.6822	6.6822
211	CONTAM_K2C6A_HUMAN;K2C6A_HUMAN	ALGGGLSSVGGGSSTLK	1.0000	6.3733	6.3733
212	A2GL_HUMAN	ALGHLDLSGNR	1.0000	8.2796	8.2796
213	TTHY_HUMAN	ALGLSPFHEHAEVVFTANDSGPR	1.0000	9.8005	9.8005
214	TTHY_HUMAN	ALGLSPFHEHAEVVFTANDSGPRR	1.0000	7.2686	7.2686
215	PRG4_HUMAN	ALGPSQTHTLR	1.0000	6.4150	6.4150
216	CO6A3_HUMAN	ALGSALEYTLENVFESAPNPR	1.0000	6.6457	6.6457
217	A2MG_HUMAN	ALGYLNTGYQR	1.0000	8.0414	8.0414
218	CNDP1_HUMAN	ALHLDLEEYR	1.0000	7.5115	7.5115
219	CO2_HUMAN	ALHQVFEHMLDVSK	1.0000	7.7338	7.7338
220	C4BPB_HUMAN	ALLAFQESK	1.0000	8.3666	8.3666
221	A2MG_HUMAN	ALLAYAFALAGNQDK	1.0000	7.5282	7.5282
222	A2MG_HUMAN	ALLAYAFALAGNQDKR	1.0000	7.0161	7.0161
223	PZP_HUMAN	ALLAYAFSLLGK	1.0000	6.5520	6.5520
224	PSA7_HUMAN	ALLEVVQSGGK	1.0000	5.7984	5.7984
225	OAF_HUMAN	ALLLGELEK	1.0000	6.8532	6.8532
226	DESP_HUMAN	ALLQALLQTEDMLK	1.0000	5.6500	5.6500
227	CHLE_HUMAN	ALLQSGSFNAPWAVTSLYEAR	1.0000	7.3906	7.3906
228	BST1_HUMAN	ALLSPEQR	1.0000	6.5028	6.5028
229	TBB5_HUMAN	ALLVDLEPGTMDSVR	0.9967	5.7405	5.7405
230	CONTAM_CO5_HUMAN	ALLVGEHLNLLVTPK	1.0000	7.8874	7.8874
231	APOE_HUMAN	ALMDETMK	1.0000	7.9904	7.9904
232	PLAK_HUMAN	ALMGSPQLVAAVVR	0.9936	4.7791	4.7791
233	CH60_HUMAN	ALMLQGVDLLADAVAVTMGPK	1.0000	6.6739	6.6739
234	ICOSL_HUMAN	ALMSPAGMLR	1.0000	5.8857	5.8857
235	CO6_HUMAN	ALNHLPLEYNSALYSR	1.0000	8.4549	8.4549
236	CO6A3_HUMAN	ALNLGYALDYAQR	1.0000	6.3795	6.3795
237	S10A8_HUMAN	ALNSLLDVYHK	1.0000	6.7065	6.7065
238	IGHG1_HUMAN	ALPAPLEK	1.0000	8.2730	8.2730
239	PGAM1_HUMAN	ALPFWNEELVPQLK	1.0000	5.3904	5.3904
240	IBP1_HUMAN	ALPGEQQPLHALTR	0.9982	5.7046	5.7046
241	CO9_HUMAN	ALPTTYEK	1.0000	7.6357	7.6357
242	OSTP_HUMAN	ALPVAQDLNAPSDWDSR	1.0000	6.7853	6.7853
243	AFAM_HUMAN	ALPVTQYLK	1.0000	8.7942	8.7942
244	CONTAM_A1AG_BOVIN	ALQAAFFYLEPR	1.0000	6.0145	6.0145
245	ALDOB_HUMAN	ALQASALAAWGGK	1.0000	6.0666	6.0666
246	LAMP1_HUMAN	ALQATVGNSYK	1.0000	6.3300	6.3300
247	ANGT_HUMAN	ALQDQLVLVAAK	1.0000	8.5693	8.5693
248	ANGT_HUMAN	ALQDQLVLVAAKLDTEDK	1.0000	6.8228	6.8228
249	CO6_HUMAN	ALQEYAAK	0.9927	6.6084	6.6084
250	FIBG_HUMAN	ALQLTYNPDESSKPNMLDAATLK	1.0000	8.3784	8.3784
251	MBL2_HUMAN	ALQTEMAR	1.0000	6.2415	6.2415
252	ALS_HUMAN	ALRDFALQNPSAVPR	1.0000	6.6756	6.6756
253	CD109_HUMAN	ALSEFAALMNTER	1.0000	7.6497	7.6497
254	EST1_HUMAN	ALSESGVALTSVLVK	1.0000	5.1487	5.1487
255	ITIH4_HUMAN	ALSGGSLQLENGYFVHYFAPEGLTTMPK	1.0000	7.0164	7.0164
256	FCGBP_HUMAN	ALSGLTLDGHAVGAK	1.0000	6.4312	6.4312
257	HEG1_HUMAN	ALSLAPLAGAGLELQLER	1.0000	5.9593	5.9593
258	CONTAM_API_ACHLY	ALSLNFGFTDYYMPAGGR	1.0000	7.9029	7.9029
259	CEL_HUMAN	ALSQSGVALSPWVLQK	1.0000	6.3810	6.3810
260	NCAM1_HUMAN	ALSSEWKPELR	1.0000	6.0769	6.0769
261	TBB1_HUMAN	ALSVAELTQQMFDAR	1.0000	5.3045	5.3045
262	VWF_HUMAN	ALSVVWDR	1.0000	6.6770	6.6770
263	FIBA_HUMAN	ALTDMPQMR	1.0000	8.5441	8.5441
264	CSF1R_HUMAN	ALTFELTLR	1.0000	5.1388	5.1388
265	LYAM3_HUMAN	ALTNEAENWADNEPNNK	1.0000	4.9213	4.9213
266	FBLN1_HUMAN	ALTPPHPASQANLLFDLTEGNLR	1.0000	8.2084	8.2084
267	FBLN1_HUMAN	ALTPPHPASQANLLFDLTEGNLRDSFDLLK	1.0000	6.9667	6.9667
268	MOES_HUMAN	ALTSELANAR	0.9995	6.6977	6.6977
269	MOES_HUMAN	ALTSELANARDESK	1.0000	5.3305	5.3305
270	APOB_HUMAN	ALVDTLKFVTQAEGAK	0.9997	5.2069	5.2069
271	CONTAM_CO5_HUMAN	ALVEGVDQLFTDYQLK	1.0000	8.3692	8.3692
272	APOB_HUMAN	ALVEQGFTVPELK	1.0000	9.2553	9.2553
273	AMYP_HUMAN	ALVFVDNHDNQR	1.0000	4.9328	4.9328
274	ALBU_HUMAN;CONTAM_ALBU_HUMAN	ALVLLAFAQYLQQCPFEDHVK	1.0000	6.8541	6.8541
275	APOA4_HUMAN	ALVQQMEQLR	1.0000	9.2693	9.2693
276	KAIN_HUMAN	ALWEKPFLSSR	1.0000	7.0137	7.0137
277	CERU_HUMAN	ALYLQYTDETFR	1.0000	9.2373	9.2373
278	CERU_HUMAN	ALYLQYTDETFRTTLEKPVWLGFLGPLLK	1.0000	5.5012	5.5012
279	HYAL1_HUMAN	ALYPSLYMPAVLEGTGK	1.0000	5.6453	5.6453
280	ATRN_HUMAN	ALYVHGGYK	1.0000	6.8715	6.8715
281	APOB_HUMAN	ALYWVNGQVPDGVSK	1.0000	8.7475	8.7475
282	PEDF_HUMAN	ALYYDLLSSPDLHGTYK	1.0000	8.5424	8.5424
283	CO8A_HUMAN	AMAVEDLLSR	1.0000	8.4795	8.4795
284	PGBM_HUMAN	AMDFNGLLTLR	1.0000	5.6347	5.6347
285	H2B1B_HUMAN;H2B1C_HUMAN;H2B1D_HUMAN;H2B1H_HUMAN;H2B1J_HUMAN;H2B1K_HUMAN;H2B1L_HUMAN;H2B1M_HUMAN;H2B1N_HUMAN;H2B1O_HUMAN;H2B2E_HUMAN;H2B2F_HUMAN;H2B3B_HUMAN;H2BFS_HUMAN	AMGLMNSFVNDLFER	1.0000	6.3164	6.3164
286	FHR5_HUMAN	AMLSSPPFR	1.0000	6.9330	6.9330
287	ANGT_HUMAN	ANAGKPKDPTFLPAPLQAK	1.0000	4.8222	4.8222
288	MYH9_HUMAN	ANLQLDQLNTDLNLER	1.0000	5.4021	5.4021
289	APOL1_HUMAN	ANLQSVPHASASRPR	1.0000	5.4791	5.4791
290	ITIH1_HUMAN	ANLSSQALQMSLDYGFVTPLTSMSLR	1.0000	5.8235	5.8235
291	ICAM1_HUMAN	ANLTVVLLR	0.9994	4.7999	4.7999
292	IGLL5_HUMAN	ANPTVTLFPPSSEELQANK	1.0000	7.1848	7.1848
293	ANT3_HUMAN;CONTAM_ANT3_HUMAN	ANRPFLVFLR	1.0000	6.7831	6.7831
294	CO4A_HUMAN	ANSFLGEK	1.0000	7.5102	7.5102
295	HV372_HUMAN	ANSYTTEYAASVK	1.0000	6.0120	6.0120
296	ITIH4_HUMAN	ANTVQEATFQMELPK	1.0000	8.5471	8.5471
297	ITIH4_HUMAN	ANTVQEATFQMELPKK	1.0000	8.1397	8.1397
298	ALS_HUMAN	ANVFVQLPR	1.0000	8.0401	8.0401
299	EXTL2_HUMAN	APDELWNSLGPHPLPVLFK	1.0000	6.5846	6.5846
300	MOES_HUMAN	APDFVFYAPR	1.0000	5.1208	5.1208
301	PROZ_HUMAN	APDLQDLPWQVK	1.0000	7.1634	7.1634
302	C1RL_HUMAN	APEGFAVR	1.0000	7.4736	7.4736
303	GDIR2_HUMAN	APEPHVEEDDDDELDSK	1.0000	5.8944	5.8944
304	MASP1_HUMAN	APEPLSTQSHSVLLLFHSDNSGENR	1.0000	7.4435	7.4435
305	MASP1_HUMAN	APEPLSTQSHSVLLLFHSDNSGENRGWR	1.0000	6.4287	6.4287
306	MASP1_HUMAN	APGELEHGLLTFSTR	1.0000	7.6975	7.6975
307	CONTAM_CRP_HUMAN;CRP_HUMAN	APLTKPLK	0.9929	5.1058	5.1058
308	TRFE_HUMAN;trFE_HUMAN	APNHAVVTR	0.9935	4.8257	4.8257
309	CONTAM_API_ACHLY	APNTPASGANGDGSMSQTQSGSTVK	1.0000	8.4324	8.4324
310	AMBP_HUMAN	APQLRETLLQDFR	0.9953	6.1659	6.1659
311	MEGF8_HUMAN	APQTVELPAVAGHTLTAR	1.0000	5.6584	5.6584
312	IL6RB_HUMAN	APSFWYK	0.9928	5.4447	5.4447
313	FA5_HUMAN	APSHQQATTAGSPLR	1.0000	5.6319	5.6319
314	ATS13_HUMAN	APSPWGSLR	0.9986	6.3804	6.3804
315	CO3_HUMAN	APSTWLTAYVVK	1.0000	8.4428	8.4428
316	CONTAM_K1C16_HUMAN;K1C16_HUMAN	APSTYGGGLSVSSR	1.0000	6.8448	6.8448
317	CONTAM_K1C14_HUMAN;K1C14_HUMAN	APSTYGGGLSVSSSR	1.0000	5.7693	5.7693
318	TENA_HUMAN	APTAQVESFR	1.0000	6.0474	6.0474
319	CONTAM_trYP_PIG	APVLSDSSCK	1.0000	6.1417	6.1417
320	PLMN_HUMAN	APWCHTTNSQVR	0.9995	5.4019	5.4019
321	HLAB_HUMAN	APWLEQEGPEYWDR	1.0000	5.3020	5.3020
322	ECM1_HUMAN	APYPNYDR	1.0000	6.2943	6.2943
323	ECM1_HUMAN	APYPNYDRDLLTLDLGR	1.0000	7.1828	7.1828
324	PON3_HUMAN	AQALELSGGFDK	1.0000	7.2131	7.2131
325	PTGDS_HUMAN	AQGFTEDTLVFLPQTDK	1.0000	7.3813	7.3813
326	UBP14_HUMAN	AQLFALTGVQPAR	0.9994	5.0989	5.0989
327	CFAI_HUMAN	AQLGDLPWQVALK	1.0000	8.4883	8.4883
328	HS71A_HUMAN;HS71B_HUMAN	AQLHDLVLVGGSTR	1.0000	4.7920	4.7920
329	PGBM_HUMAN	AQLHGGLLR	1.0000	5.7519	5.7519
330	AMPN_HUMAN	AQLLNDAFNLASAHK	1.0000	6.9665	6.9665
331	FIBA_HUMAN	AQLVDMK	1.0000	6.7840	6.7840
332	FETUA_HUMAN	AQLVPLPPSTYVEFTVSGTDCVAK	0.9997	6.7780	6.7780
333	MOES_HUMAN	AQMVQEDLEK	0.9930	5.9387	5.9387
334	HYAL1_HUMAN	AQNDQLGWLWGQSR	1.0000	5.6249	5.6249
335	APOB_HUMAN	AQNLYQELLTQEGQASFQGLK	1.0000	8.8240	8.8240
336	CONTAM_GELS_HUMAN;GELS_HUMAN	AQPVQVAEGSEPDGFWEALGGK	1.0000	8.2995	8.2995
337	SPRL1_HUMAN	AQSLAYHLK	1.0000	6.2745	6.2745
338	CYTM_HUMAN	AQSQLVAGLK	0.9983	6.2184	6.2184
339	PI16_HUMAN	AQVSPTASDMLHMR	1.0000	6.8522	6.8522
340	THBG_HUMAN	AQWANPFDPSK	1.0000	8.0194	8.0194
341	THBG_HUMAN	AQWANPFDPSKTEDSSSFLLDK	1.0000	8.0295	8.0295
342	K2C1_HUMAN	AQYEDLAQK	1.0000	7.2414	7.2414
343	CONTAM_K2C5_HUMAN;K2C5_HUMAN	AQYEELANR	1.0000	6.6107	6.6107
344	K22E_HUMAN	AQYEELAQR	1.0000	7.3185	7.3185
345	PHLD_HUMAN	AQYVLLSPEASSR	1.0000	7.8148	7.8148
346	ZA2G_HUMAN	AREDLFMETLK	1.0000	8.6526	8.6526
347	ENTRAP_ITIH3_HUMAN	AREEHRPLER	1.0000	6.5204	6.5204
348	CASPE_HUMAN	AREGSEEDLDALEHMFR	1.0000	6.2567	6.2567
349	S38AA_HUMAN	ARETVENLPPLPLDPVLR	0.9923	5.0378	5.0378
350	HSP7C_HUMAN	ARFEELNADLFR	1.0000	6.1768	6.1768
351	CONTAM_GELS_HUMAN;GELS_HUMAN	ARVHVSEEGTEPEAMLQVLGPKPALPAGTEDTAK	1.0000	7.0306	7.0306
352	CO4B_HUMAN	ASAGLLGAHAAALTAYALTLTK	1.0000	8.7217	8.7217
353	CO4B_HUMAN	ASAGLLGAHAAALTAYALTLTKAPADLR	1.0000	6.3144	6.3144
354	GAPR1_HUMAN	ASASDGSSFVVAR	1.0000	6.1294	6.1294
355	APOC3_HUMAN	ASEAEDASLLSFMQGYMK	1.0000	5.5300	5.5300
356	FA5_HUMAN	ASEFLGYWEPR	1.0000	7.6757	7.6757
357	OAF_HUMAN	ASEQAELPR	0.9986	5.0955	5.0955
358	ANTR1_HUMAN	ASEQLYYENR	0.9989	5.2293	5.2293
359	HV169_HUMAN	ASGGTFSSYALSWVR	0.9914	5.9753	5.9753
360	APOB_HUMAN	ASGSLPYTQTLQDHLNSLK	1.0000	9.0209	9.0209
361	KV228_HUMAN;KV240_HUMAN;KVD28_HUMAN;KVD40_HUMAN	ASGVPDRFSGSGSGTDFTLK	1.0000	7.1574	7.1574
362	HV108_HUMAN	ASGYTFTSYDLNWVR	1.0000	6.1004	6.1004
363	LG3BP_HUMAN	ASHEEVEGLVEK	1.0000	7.4566	7.4566
364	CO3_HUMAN	ASHLGLAR	1.0000	7.8526	7.8526
365	NAR3_HUMAN	ASHQQLDTVWENAK	1.0000	5.8019	5.8019
366	FA5_HUMAN	ASKPGWWLLNTEVGENQR	1.0000	6.7801	6.7801
367	PAFA_HUMAN	ASLAFLQK	1.0000	6.3349	6.3349
368	CONTAM_K1C17_HUMAN;K1C17_HUMAN	ASLEGNLAETENR	1.0000	6.3822	6.3822
369	CONTAM_K1C16_HUMAN;K1C16_HUMAN	ASLENSLEETK	1.0000	8.0108	8.0108
370	ACTN1_HUMAN	ASLHEAWTDGK	0.9993	5.9112	5.9112
371	NID1_HUMAN	ASLHGGEPTTLLR	1.0000	5.6804	5.6804
372	AMPE_HUMAN	ASLLDDAFALAR	1.0000	6.6290	6.6290
373	PGRP2_HUMAN	ASLLTMAFLNGALDGVLLGDYLSR	1.0000	6.1141	6.1141
374	PZP_HUMAN	ASPAFLASQNTK	1.0000	6.7005	6.7005
375	CNTN1_HUMAN	ASPFPVYK	1.0000	6.1667	6.1667
376	FCGBP_HUMAN	ASQHGSDVVLETDFGLR	1.0000	6.7666	6.7666
377	ARC1B_HUMAN	ASSEGGTAAGAGLDSLHK	1.0000	4.7811	4.7811
378	CO4B_HUMAN	ASSFLGEK	1.0000	7.2059	7.2059
379	IGK_HUMAN	ASSLESGVPSR	1.0000	6.7594	6.7594
380	CLUS_HUMAN	ASSLLDELFQDR	1.0000	8.8078	8.8078
381	CLUS_HUMAN	ASSLLDELFQDRFFTR	1.0000	7.4425	7.4425
382	CONTAM_CLUS_BOVIN	ASSLMDELFQDR	0.9988	5.5462	5.5462
383	IC1_HUMAN	ASSNPNATSSSSQDPESLQDRGEGK	1.0000	5.1634	5.1634
384	FETUB_HUMAN	ASSQWVVGPSYFVEYLLK	1.0000	5.1960	5.1960
385	FAAA_HUMAN	ASSVVVSGTPLR	1.0000	5.7613	5.7613
386	FIBG_HUMAN	ASTPNGYDNGLLWATWK	1.0000	7.8851	7.8851
387	ICAM1_HUMAN	ASVSVTAEDEGTQR	1.0000	5.7824	5.7824
388	TRFE_HUMAN;trFE_HUMAN	ASYLDCLR	0.9959	6.6711	6.6711
389	CETP_HUMAN	ASYPDLTGEK	1.0000	6.4498	6.4498
390	LBP_HUMAN	ATAQMLEVMFK	1.0000	7.0809	7.0809
391	PRDX2_HUMAN	ATAVVDGAFK	1.0000	8.1595	8.1595
392	ANT3_HUMAN;CONTAM_ANT3_HUMAN	ATEDEGSEQKLPEATNR	1.0000	8.4362	8.4362
393	APOA1_HUMAN	ATEHLSTLSEK	1.0000	9.3569	9.3569
394	GDIR2_HUMAN	ATFMVGSYGPRPEEYEFLTPVEEAPK	0.9938	4.9584	4.9584
395	APOB_HUMAN	ATFQTPDFLVPLTDLR	1.0000	8.9993	8.9993
396	K2C6B_HUMAN	ATGGGLSSVGGGSSTLK	1.0000	6.2758	6.2758
397	KVD20_HUMAN	ATGLPDRFSGSGSGTDFTLTLSR	1.0000	7.1250	7.1250
398	APOB_HUMAN	ATGVLYDYVNK	1.0000	9.0260	9.0260
399	APOB_HUMAN	ATGVLYDYVNKYHWEHTGLTLR	1.0000	5.7429	5.7429
400	KAIN_HUMAN	ATLDVDEAGTEAAAATSFALK	1.0000	7.5569	7.5569
401	CONTAM_CO5_HUMAN	ATLLDLYK	1.0000	8.0918	8.0918
402	CONTAM_CO5_HUMAN	ATLLDLYKTGEAVAEK	0.9993	5.5049	5.5049
403	PD1L2_HUMAN	ATLLEEQLPLGK	1.0000	5.2106	5.2106
404	PTPRG_HUMAN	ATLSHVSPDSLYLFR	1.0000	6.4238	6.4238
405	HBG2_HUMAN	ATLTSLWGK	1.0000	6.8928	6.8928
406	IGLC2_HUMAN;IGLC3_HUMAN	ATLVCLLSDFYPGAVTVAWKADSSPVK	1.0000	6.2371	6.2371
407	APOB_HUMAN	ATLYALSHAVNNYHK	1.0000	8.4188	8.4188
408	APOB_HUMAN	ATVAVYLESLQDTK	1.0000	7.8222	7.8222
409	APOB_HUMAN	ATVAVYLESLQDTKLTLLLNWLQEALSSASLAHMK	1.0000	5.6022	5.6022
410	A2MG_HUMAN	ATVLNYLPK	1.0000	8.0407	8.0407
411	CD14_HUMAN	ATVNPSAPR	0.9926	6.4919	6.4919
412	APOH_HUMAN	ATVVYQGER	1.0000	7.9911	7.9911
413	APOH_HUMAN	ATVVYQGERVK	1.0000	4.8179	4.8179
414	A1BG_HUMAN	ATWSGAVLAGR	1.0000	9.0362	9.0362
415	DIAC_HUMAN	ATYLQNYR	1.0000	6.4800	6.4800
416	COMP_HUMAN	AVAEPGLQLK	1.0000	7.1309	7.1309
417	TLN1_HUMAN	AVAEQLPLLVQGVR	0.9939	6.0441	6.0441
418	VINC_HUMAN	AVAGNLSDPGLQK	1.0000	7.7708	7.7708
419	TLN1_HUMAN	AVASAAAALVLK	1.0000	5.3879	5.3879
420	TENX_HUMAN	AVAVSGLDPAR	1.0000	6.8939	6.8939
421	TENA_HUMAN	AVDLPGLEAATPYR	1.0000	5.9876	5.9876
422	TENA_HUMAN	AVDLPGLK	0.9924	5.5529	5.5529
423	A2MG_HUMAN	AVDQSVLLMKPDAELSASSVYNLLPEK	1.0000	7.9948	7.9948
424	PZP_HUMAN	AVDQSVLLMKPEAELSVSSVYNLLTVK	1.0000	5.2192	5.2192
425	LG3BP_HUMAN	AVDTWSWGER	1.0000	7.6667	7.6667
426	PLTP_HUMAN	AVEPQLQEEER	1.0000	7.0973	7.0973
427	ACTS_HUMAN	AVFPSLVGRPR	1.0000	5.3621	5.3621
428	TBA4A_HUMAN	AVFVDLEPTVLDELR	1.0000	5.7331	5.7331
429	TBA1B_HUMAN;TBA1C_HUMAN	AVFVDLEPTVLDEVR	1.0000	6.2303	6.2303
430	CONTAM_API_ACHLY	AVGAYSKSGTLACTGSLVNNTANDR	1.0000	6.7728	6.7728
431	HPT_HUMAN	AVGDKLPECEADDGCPKPPELAHGYVEHSVR	1.0000	6.0842	6.0842
432	COIA1_HUMAN	AVGLAGTFR	1.0000	5.9330	5.9330
433	PMGE_HUMAN	AVGPHQFLGDQEALQAALK	1.0000	6.1961	6.1961
434	CO4B_HUMAN	AVGSGATFSHYYYMLLSR	1.0000	8.0737	8.0737
435	PZP_HUMAN	AVGYLLTGYQR	1.0000	7.0529	7.0529
436	A1AT_HUMAN	AVHKAVLTLDEK	1.0000	6.1660	6.1660
437	AACT_HUMAN	AVLDVFEEGTEASAATAVK	1.0000	9.3795	9.3795
438	TFR1_HUMAN	AVLGTSNFK	1.0000	6.5436	6.5436
439	THBG_HUMAN	AVLHLGEK	1.0000	7.5225	7.5225
440	G6PI_HUMAN	AVLHVALR	0.9982	5.2566	5.2566
441	CO2_HUMAN	AVLSPGFDVFAK	1.0000	8.4996	8.4996
442	A1AT_HUMAN	AVLTLDEK	1.0000	9.0884	9.0884
443	A1AT_HUMAN	AVLTLDEKGTEAAGAMFLEALPMSLPPEVK	1.0000	6.7533	6.7533
444	TBB1_HUMAN	AVLVDLEPGTMDSLR	1.0000	6.1215	6.1215
445	S10AG_HUMAN	AVLVLVENFYK	1.0000	5.6852	5.6852
446	CO3_HUMAN	AVLYNYR	1.0000	9.2959	9.2959
447	CO3_HUMAN	AVLYNYRQNQELK	1.0000	6.8055	6.8055
448	ALBU_HUMAN;CONTAM_ALBU_HUMAN	AVMDDFAAFVEK	1.0000	9.5501	9.5501
449	CFAD_HUMAN	AVPHPDSQPDTLDHDLLLLQLSEK	1.0000	7.5439	7.5439
450	F13A_HUMAN	AVPPNNSNAAEDDLPTVELQGVVPR	1.0000	6.8171	6.8171
451	FA5_HUMAN	AVQPGETYTYK	1.0000	7.2463	7.2463
452	CAH2_HUMAN;CONTAM_CAH2_HUMAN	AVQQPDGLAVLGLFLK	1.0000	5.0400	5.0400
453	PTPRJ_HUMAN	AVSLSPTNVLLTWK	1.0000	6.2342	6.2342
454	APOB_HUMAN	AVSMPSFSLLGSDVR	1.0000	8.4340	8.4340
455	APOB_HUMAN	AVSMPSFSLLGSDVRVPSYTLLLPSLELPVLHVPR	1.0000	7.2543	7.2543
456	VWF_HUMAN	AVSPLPYLR	0.9995	6.2522	6.2522
457	LRP1_HUMAN	AVTDEEPFLLFANR	1.0000	6.0675	6.0675
458	1433T_HUMAN	AVTEQGAELSNEER	1.0000	5.3322	5.3322
459	1433B_HUMAN	AVTEQGHELSNEER	1.0000	5.5428	5.5428
460	IPSP_HUMAN	AVVEVDESGTR	1.0000	7.8428	7.8428
461	FCG3A_HUMAN	AVVFLEPQWYR	1.0000	7.6923	7.6923
462	FCG3B_HUMAN	AVVFLEPQWYSVLEK	1.0000	7.1464	7.1464
463	LEG7_HUMAN	AVVGDAQYHHFR	1.0000	5.9142	5.9142
464	VWF_HUMAN	AVVLLVTDVSVDSVDAAADAAR	1.0000	4.9509	4.9509
465	SODE_HUMAN	AVVVHAGEDDLGR	1.0000	6.4524	6.4524
466	SODE_HUMAN	AVVVHAGEDDLGRGGNQASVENGNAGR	1.0000	4.7286	4.7286
467	PEPD_HUMAN	AVYEAVLR	1.0000	6.5995	6.5995
468	FA5_HUMAN	AWAYYSAVNPEK	1.0000	7.0524	7.0524
469	ECM1_HUMAN	AWEDTLDK	1.0000	7.7911	7.7911
470	APOC4_HUMAN	AWFLESK	1.0000	7.6385	7.6385
471	FA5_HUMAN	AWGESTPLANKPGK	1.0000	6.5596	6.5596
472	FLNA_HUMAN	AWGPGLEGGVVGK	1.0000	5.5203	5.5203
473	ZPI_HUMAN	AWLMASR	1.0000	6.3912	6.3912
474	HV349_HUMAN	AYGGTTEYAASVK	1.0000	7.7628	7.7628
475	APOE_HUMAN	AYKSELEEQLTPVAEETR	1.0000	8.3425	8.3425
476	A2MG_HUMAN	AYLFLDEAHLTQALLWLSQR	1.0000	6.9502	6.9502
477	A2MG_HUMAN	AYLFLDEAHLTQALLWLSQRQK	1.0000	7.1522	7.1522
478	EF2_HUMAN	AYLPVNESFGFTADLR	1.0000	6.5439	6.5439
479	CBPB2_HUMAN	AYLSMHSYSQHLVFPYSYTR	1.0000	8.1261	8.1261
480	FCGBP_HUMAN	AYSHSVSLTR	1.0000	5.4224	5.4224
481	SAMP_HUMAN	AYSLFSYNTQGR	1.0000	6.7323	6.7323
482	SAMP_HUMAN	AYSLFSYNTQGRDNELLVYK	1.0000	6.2571	6.2571
483	GPNMB_HUMAN	AYVPLAQVK	1.0000	6.0489	6.0489
484	SAA4_HUMAN	AYWDLMLSNHQNSNR	1.0000	8.3378	8.3378
485	CO3_HUMAN	AYYENSPQQVFSTEFEVK	1.0000	8.7338	8.7338
486	PLSL_HUMAN	AYYHLLEQVAPK	1.0000	6.4383	6.4383
487	FIBG_HUMAN	CHAGHLNGVYYQGGTYSK	0.9945	5.7361	5.7361
488	KLKB1_HUMAN	CLLFSFLPASSLNDMEK	0.9986	5.4135	5.4135
489	APOB_HUMAN	CSLLVLENELNAELGLSGASMK	1.0000	6.9972	6.9972
490	HEMO_HUMAN	CSPHLVLSALTSDNHGATYAFSGTHYWR	1.0000	5.9902	5.9902
491	XPO2_HUMAN	DAALYLVTSLASK	1.0000	5.7817	5.7817
492	AFAM_HUMAN	DADPDTFFAK	1.0000	8.7598	8.7598
493	CONTAM_K1C10_HUMAN;K1C10_HUMAN	DAEAWFNEK	1.0000	7.9015	7.9015
494	CONTAM_K1C17_HUMAN;K1C17_HUMAN	DAEDWFFSK	1.0000	6.7846	6.7846
495	CONTAM_K1C14_HUMAN;K1C14_HUMAN	DAEEWFFTK	1.0000	6.8809	6.8809
496	CONTAM_K1C16_HUMAN;K1C16_HUMAN	DAETWFLSK	1.0000	6.9877	6.9877
497	COR1A_HUMAN	DAGPLLLSLK	1.0000	4.8246	4.8246
498	HSP7C_HUMAN	DAGTLAGLNVLR	1.0000	6.4031	6.4031
499	BIP_HUMAN	DAGTLAGLNVMR	1.0000	6.3032	6.3032
500	HS71L_HUMAN	DAGVLAGLNVLR	0.9995	5.4211	5.4211

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: peptides_quantification_table_table

Sort	Column	Description	ID
\|\|	Protein Name	Name/Identifier(s) of the protein (group)	`ProteinName`
\|\|	Peptide Sequence	Peptide Sequence	`PeptideSequence`
\|\|	Best Search Score	Best Search Score	`BestSearchScore`
\|\|	Average Intensity	Average intensity across all conditions	`Average_Intensity`
\|\|	blood plasma	blood plasma	`blood_plasma`

Protein Quantification Table (Showing 500 rows)

This plot shows the quantification information of proteins in the final result (mainly the mzTab file).

The quantification information of proteins is obtained from the msstats input file. The table shows the quantitative level and distribution of proteins in different study variables and run. * Peptides_Number: The number of peptides for each protein. * Average Intensity: Average intensity of each protein across all conditions with NA=0 or NA ignored. * Protein intensity in each condition (Eg. `CT=Mixture;CN=UPS1;QY=0.1fmol`): Summarize intensity of peptides.

Showing ⁵⁰⁰/₅₀₀ rows and ⁴/₄ columns.

ProteinID	Protein Name	Number of Peptides	Average Intensity	blood plasma
1	1433B_HUMAN	1	5.5428	5.5428
2	1433E_HUMAN	6	7.0074	7.0074
3	1433T_HUMAN	1	5.3322	5.3322
4	1433Z_HUMAN	5	7.0499	7.0499
5	4F2_HUMAN	8	7.2806	7.2806
6	6PGD_HUMAN	2	6.0220	6.0220
7	A1AG1_HUMAN	10	8.4759	8.4759
8	A1AG2_HUMAN	6	8.6081	8.6081
9	A1AT_HUMAN	36	10.3121	10.3121
10	A1BG_HUMAN	14	10.0529	10.0529
11	A2AP_HUMAN	15	9.5034	9.5034
12	A2GL_HUMAN	10	9.3554	9.3554
13	A2MG_HUMAN	63	9.5265	9.5265
14	A4_HUMAN	1	5.6606	5.6606
15	AACT_HUMAN	28	10.3909	10.3909
16	AATC_HUMAN	2	5.4660	5.4660
17	ABCD3_HUMAN	1	6.0229	6.0229
18	ACADV_HUMAN	1	7.3439	7.3439
19	ACES_HUMAN	1	5.3543	5.3543
20	ACE_HUMAN	8	7.7527	7.7527
21	ACTBL_HUMAN	6	7.8915	7.8915
22	ACTB_HUMAN;ACTG_HUMAN	8	8.4190	8.4190
23	ACTC_HUMAN	1	5.8513	5.8513
24	ACTN1_HUMAN	19	7.6279	7.6279
25	ACTS_HUMAN	9	8.1438	8.1438
26	ADA2_HUMAN	5	6.8083	6.8083
27	ADEC1_HUMAN	1	5.4188	5.4188
28	ADIPO_HUMAN	5	7.9267	7.9267
29	ADT2_HUMAN	2	6.8402	6.8402
30	ADT3_HUMAN	1	5.8031	5.8031
31	AFAM_HUMAN	22	9.7319	9.7319
32	AGRE1_HUMAN	1	6.1030	6.1030
33	AGRF5_HUMAN	3	6.5983	6.5983
34	AGRG6_HUMAN	3	6.3593	6.3593
35	AGRL4_HUMAN	2	5.5922	5.5922
36	AHSP_HUMAN	2	6.2100	6.2100
37	AL1A1_HUMAN	4	6.3021	6.3021
38	AL4A1_HUMAN	1	6.4031	6.4031
39	ALBU_HUMAN;CONTAM_ALBU_HUMAN	46	10.8600	10.8600
40	ALDOA_HUMAN	8	7.6226	7.6226
41	ALDOB_HUMAN	8	7.7182	7.7182
42	ALS_HUMAN	22	9.2564	9.2564
43	AMBP_HUMAN	9	9.1926	9.1926
44	AMD_HUMAN	4	5.9594	5.9594
45	AMPE_HUMAN	4	6.6902	6.6902
46	AMPN_HUMAN	24	7.9286	7.9286
47	AMY1A_HUMAN;AMY1B_HUMAN;AMY1C_HUMAN	1	4.5475	4.5475
48	AMYP_HUMAN	6	6.3282	6.3282
49	ANAG_HUMAN	9	7.0657	7.0657
50	ANGI_HUMAN	3	6.9475	6.9475
51	ANGL3_HUMAN	5	6.5387	6.5387
52	ANGL6_HUMAN	4	6.1858	6.1858
53	ANGT_HUMAN	15	9.4823	9.4823
54	ANKH1_HUMAN	1	6.6340	6.6340
55	ANT3_HUMAN;CONTAM_ANT3_HUMAN	28	10.0384	10.0384
56	ANTR1_HUMAN	1	5.2293	5.2293
57	ANTR2_HUMAN	1	6.6743	6.6743
58	ANXA1_HUMAN	2	6.2787	6.2787
59	ANXA2_HUMAN	4	6.3409	6.3409
60	ANXA5_HUMAN;CONTAM_ANXA5_HUMAN	1	5.0124	5.0124
61	ANXA7_HUMAN	1	6.3220	6.3220
62	AOC3_HUMAN	6	6.9785	6.9785
63	APLP1_HUMAN	1	5.4930	5.4930
64	APMAP_HUMAN	5	7.2817	7.2817
65	APOA1_HUMAN	32	11.0655	11.0655
66	APOA2_HUMAN	8	10.1187	10.1187
67	APOA4_HUMAN	37	10.3460	10.3460
68	APOA5_HUMAN	1	5.5461	5.5461
69	APOA_HUMAN	14	7.7261	7.7261
70	APOB_HUMAN	303	10.8843	10.8843
71	APOC1_HUMAN	5	9.4693	9.4693
72	APOC2_HUMAN	6	9.2926	9.2926
73	APOC3_HUMAN	5	9.7914	9.7914
74	APOC4_HUMAN	5	8.1885	8.1885
75	APOD_HUMAN	5	9.3378	9.3378
76	APOE_HUMAN	22	9.6627	9.6627
77	APOF_HUMAN	5	7.9847	7.9847
78	APOH_HUMAN	7	9.1549	9.1549
79	APOL1_HUMAN	12	8.6651	8.6651
80	APOM_HUMAN	6	8.7384	8.7384
81	ARC1B_HUMAN	2	4.9239	4.9239
82	ARPC3_HUMAN	1	5.4080	5.4080
83	ASGR2_HUMAN	2	6.4620	6.4620
84	ASSY_HUMAN	2	7.4416	7.4416
85	AT1A1_HUMAN	1	5.7726	5.7726
86	ATF6A_HUMAN	1	5.3791	5.3791
87	ATL2_HUMAN	1	5.2754	5.2754
88	ATL4_HUMAN	2	6.2389	6.2389
89	ATPB_HUMAN	4	7.5456	7.5456
90	ATRN_HUMAN	19	8.6822	8.6822
91	ATS13_HUMAN	11	7.1756	7.1756
92	B2MG_HUMAN;CONTAM_B2MG_HUMAN	2	7.6032	7.6032
93	B3AT_HUMAN	3	6.5349	6.5349
94	B3GN2_HUMAN	3	6.5056	6.5056
95	B4GA1_HUMAN	3	6.6071	6.6071
96	B4GT1_HUMAN	1	5.4594	5.4594
97	BASP1_HUMAN	2	5.6050	5.6050
98	BGH3_HUMAN	18	7.9238	7.9238
99	BHMT1_HUMAN	1	6.1642	6.1642
100	BIEA_HUMAN	1	5.4095	5.4095
101	BIP_HUMAN	23	7.9379	7.9379
102	BIRC1_HUMAN	1	5.6028	5.6028
103	BLMH_HUMAN	1	5.6512	5.6512
104	BLVRB_HUMAN	7	7.9717	7.9717
105	BRD1_HUMAN	1	8.0725	8.0725
106	BST1_HUMAN	4	7.2320	7.2320
107	BTD_HUMAN	9	8.4721	8.4721
108	C163A_HUMAN	2	7.8050	7.8050
109	C1QA_HUMAN	3	7.5317	7.5317
110	C1QB_HUMAN	5	8.4417	8.4417
111	C1QC_HUMAN	4	8.5753	8.5753
112	C1QT3_HUMAN	1	6.2288	6.2288
113	C1RL_HUMAN	7	8.2810	8.2810
114	C1R_HUMAN	16	9.1336	9.1336
115	C1S_HUMAN	14	9.5143	9.5143
116	C1TC_HUMAN	1	6.2254	6.2254
117	C4BPA_HUMAN	12	9.4710	9.4710
118	C4BPB_HUMAN	2	8.4732	8.4732
119	CA2D1_HUMAN	13	7.7663	7.7663
120	CAD13_HUMAN	11	7.4239	7.4239
121	CADH1_HUMAN	4	6.8740	6.8740
122	CADH2_HUMAN	4	6.8049	6.8049
123	CADH5_HUMAN	13	8.3675	8.3675
124	CADH6_HUMAN	3	6.7154	6.7154
125	CADM1_HUMAN	1	6.6410	6.6410
126	CAH1_HUMAN;CONTAM_CAH1_HUMAN	12	8.7035	8.7035
127	CAH2_HUMAN;CONTAM_CAH2_HUMAN	10	8.3910	8.3910
128	CAH3_HUMAN	1	5.8102	5.8102
129	CALD1_HUMAN	1	6.1131	6.1131
130	CALL5_HUMAN	2	6.9875	6.9875
131	CALM1_HUMAN;CALM2_HUMAN;CALM3_HUMAN	3	7.9662	7.9662
132	CALR_HUMAN	3	6.8023	6.8023
133	CALU_HUMAN	1	5.8446	5.8446
134	CAMP_HUMAN	1	6.2232	6.2232
135	CAP1_HUMAN	1	6.0038	6.0038
136	CASA1_HUMAN	3	6.8774	6.8774
137	CASB_HUMAN	2	7.3691	7.3691
138	CASK_HUMAN	1	6.1274	6.1274
139	CASPE_HUMAN	5	6.8875	6.8875
140	CATA_HUMAN;CONTAM_CATA_HUMAN	18	8.5507	8.5507
141	CATB_HUMAN	2	6.2409	6.2409
142	CATD_HUMAN;CONTAM_CATD_HUMAN	4	6.6655	6.6655
143	CATH_HUMAN	1	5.8604	5.8604
144	CATL1_HUMAN	1	5.9072	5.9072
145	CATS_HUMAN	3	6.4160	6.4160
146	CATZ_HUMAN	3	6.4618	6.4618
147	CAVN2_HUMAN	1	6.4211	6.4211
148	CBG_HUMAN	11	9.2776	9.2776
149	CBPB2_HUMAN	11	8.9027	8.9027
150	CBPN_HUMAN	12	8.7406	8.7406
151	CBPQ_HUMAN	1	5.9535	5.9535
152	CBX1_HUMAN;CBX3_HUMAN	1	6.0285	6.0285
153	CC126_HUMAN	2	5.6693	5.6693
154	CCD33_HUMAN	1	6.4125	6.4125
155	CCL5_HUMAN	1	5.4203	5.4203
156	CD109_HUMAN	9	7.6928	7.6928
157	CD14_HUMAN	8	7.9693	7.9693
158	CD166_HUMAN	5	6.7460	6.7460
159	CD248_HUMAN	2	5.8399	5.8399
160	CD34_HUMAN	1	6.2486	6.2486
161	CD44_HUMAN	2	7.6712	7.6712
162	CD5L_HUMAN	1	7.7732	7.7732
163	CD99_HUMAN	1	5.5407	5.5407
164	CEL3A_HUMAN	3	7.3187	7.3187
165	CEL_HUMAN	1	6.3810	6.3810
166	CERU_HUMAN	54	10.2327	10.2327
167	CETP_HUMAN	7	7.1451	7.1451
168	CFAB_HUMAN	28	10.1353	10.1353
169	CFAD_HUMAN	6	7.7868	7.7868
170	CFAH_HUMAN	29	10.0010	10.0010
171	CFAI_HUMAN	13	9.2224	9.2224
172	CH10_HUMAN	1	5.4139	5.4139
173	CH60_HUMAN	3	7.6651	7.6651
174	CHLE_HUMAN	19	8.5621	8.5621
175	CILP2_HUMAN	3	6.8732	6.8732
176	CLH1_HUMAN	1	4.6442	4.6442
177	CLIC1_HUMAN	3	6.5419	6.5419
178	CLUS_HUMAN	19	10.0579	10.0579
179	CNDP1_HUMAN	22	8.7468	8.7468
180	CNTFR_HUMAN	2	6.3100	6.3100
181	CNTN1_HUMAN	13	7.1263	7.1263
182	CNTN3_HUMAN	4	6.2651	6.2651
183	CNTN4_HUMAN	1	5.7853	5.7853
184	CO2_HUMAN	24	9.1998	9.1998
185	CO3_HUMAN	128	11.0926	11.0926
186	CO4A_HUMAN	3	7.9112	7.9112
187	CO4B_HUMAN	83	10.5161	10.5161
188	CO5A1_HUMAN	1	6.9157	6.9157
189	CO6A1_HUMAN	5	7.0989	7.0989
190	CO6A3_HUMAN	33	7.7969	7.7969
191	CO6_HUMAN	20	9.2422	9.2422
192	CO7_HUMAN	22	9.2450	9.2450
193	CO8A_HUMAN	10	9.0585	9.0585
194	CO8B_HUMAN	20	8.9755	8.9755
195	CO8G_HUMAN	6	8.8535	8.8535
196	CO9_HUMAN	20	9.4214	9.4214
197	COF1_HUMAN	3	6.8323	6.8323
198	COFA1_HUMAN	1	4.7497	4.7497
199	COIA1_HUMAN	6	6.7605	6.7605
200	COL10_HUMAN	5	7.1867	7.1867
201	COL11_HUMAN	4	7.5854	7.5854
202	COMD3_HUMAN	1	6.9196	6.9196
203	COMP_HUMAN	7	7.6159	7.6159
204	CONTAM_A1AG_BOVIN	5	6.7655	6.7655
205	CONTAM_A2AP_BOVIN	1	7.0141	7.0141
206	CONTAM_ANT3_BOVIN	2	5.8708	5.8708
207	CONTAM_API_ACHLY	16	10.2758	10.2758
208	CONTAM_APOA1_BOVIN	1	9.0358	9.0358
209	CONTAM_APOE_BOVIN	1	6.2267	6.2267
210	CONTAM_CASA1_BOVIN	3	6.4840	6.4840
211	CONTAM_CLUS_BOVIN	1	5.5462	5.5462
212	CONTAM_CO3_BOVIN	6	8.2215	8.2215
213	CONTAM_CO4_BOVIN	4	8.4849	8.4849
214	CONTAM_CO5_HUMAN	69	9.7588	9.7588
215	CONTAM_CRP_HUMAN;CRP_HUMAN	5	7.5132	7.5132
216	CONTAM_DHE3_BOVIN;DHE3_HUMAN	1	6.0266	6.0266
217	CONTAM_DMKN_HUMAN	1	5.4512	5.4512
218	CONTAM_FILA2_HUMAN;FILA2_HUMAN	3	6.9525	6.9525
219	CONTAM_GELS_BOVIN	2	7.2882	7.2882
220	CONTAM_GELS_HUMAN;GELS_HUMAN	28	9.8957	9.8957
221	CONTAM_GSTA1_HUMAN;GSTA1_HUMAN;GSTA2_HUMAN;GSTA3_HUMAN	1	7.4347	7.4347
222	CONTAM_GSTP1_HUMAN;GSTP1_HUMAN	2	6.7486	6.7486
223	CONTAM_HBA_BOVIN	1	8.0900	8.0900
224	CONTAM_HBA_HUMAN;HBA_HUMAN	12	9.1832	9.1832
225	CONTAM_HBB_BOVIN	1	6.2301	6.2301
226	CONTAM_HBB_HUMAN;HBB_HUMAN	15	9.4766	9.4766
227	CONTAM_HORN_HUMAN;HORN_HUMAN	1	6.2209	6.2209
228	CONTAM_IGF2_HUMAN;IGF2_HUMAN	1	5.6954	5.6954
229	CONTAM_ITIH3_BOVIN	1	6.5393	6.5393
230	CONTAM_ITIH4_BOVIN	1	7.8476	7.8476
231	CONTAM_K1C10_HUMAN;K1C10_HUMAN	30	8.7775	8.7775
232	CONTAM_K1C13_HUMAN	7	7.3727	7.3727
233	CONTAM_K1C14_HUMAN;K1C14_HUMAN	9	7.5441	7.5441
234	CONTAM_K1C16_HUMAN;K1C16_HUMAN	21	8.3649	8.3649
235	CONTAM_K1C17_HUMAN;K1C17_HUMAN	14	7.7990	7.7990
236	CONTAM_K2C1B_HUMAN;K2C1B_HUMAN	2	5.4784	5.4784
237	CONTAM_K2C4_HUMAN;K2C4_HUMAN	4	6.9732	6.9732
238	CONTAM_K2C5_HUMAN;K2C5_HUMAN	20	8.1267	8.1267
239	CONTAM_K2C5_MOUSE	1	5.6057	5.6057
240	CONTAM_K2C6A_HUMAN;K2C6A_HUMAN	13	7.8691	7.8691
241	CONTAM_K2C78_HUMAN;K2C78_HUMAN	7	7.2355	7.2355
242	CONTAM_K2C8_HUMAN;K2C8_HUMAN	1	6.3576	6.3576
243	CONTAM_KCRM_HUMAN;KCRM_HUMAN	8	6.8155	6.8155
244	CONTAM_KRT85_HUMAN;KRT85_HUMAN	2	6.6975	6.6975
245	CONTAM_LALBA_HUMAN;LALBA_HUMAN	1	6.7878	6.7878
246	CONTAM_LYSC_HUMAN;LYSC_HUMAN	2	7.9707	7.9707
247	CONTAM_MYG_HUMAN;MYG_HUMAN	1	6.2216	6.2216
248	CONTAM_OVAL_CHICK	2	6.6128	6.6128
249	CONTAM_PPIA_HUMAN;PPIA_HUMAN	5	7.5117	7.5117
250	CONTAM_PRDX1_HUMAN;PRDX1_HUMAN	5	6.5789	6.5789
251	CONTAM_Q61782_MOUSE	1	5.3386	5.3386
252	CONTAM_Q9TRI1_BOVIN	2	8.5656	8.5656
253	CONTAM_REF_HEVBR	5	7.9956	7.9956
254	CONTAM_RS27A_HUMAN;RL40_HUMAN;RS27A_HUMAN;UBB_HUMAN;UBC_HUMAN	2	6.3547	6.3547
255	CONTAM_SODC_HUMAN;SODC_HUMAN	2	6.4617	6.4617
256	CONTAM_SRPP_HEVBR	1	5.7322	5.7322
257	CONTAM_THBG_BOVIN	1	5.1856	5.1856
258	CONTAM_THIO_HUMAN;THIO_HUMAN	1	6.8734	6.8734
259	CONTAM_trYP_PIG	7	10.3002	10.3002
260	COR1A_HUMAN	2	5.2218	5.2218
261	COR1C_HUMAN	1	5.4806	5.4806
262	CPN2_HUMAN	11	9.1589	9.1589
263	CPNS1_HUMAN	1	4.5756	4.5756
264	CPSM_HUMAN	9	7.7333	7.7333
265	CR2_HUMAN	7	6.9416	6.9416
266	CRAC1_HUMAN	15	7.8316	7.8316
267	CRHBP_HUMAN	2	5.4192	5.4192
268	CRIS3_HUMAN	1	6.3906	6.3906
269	CRNN_HUMAN	2	6.7825	6.7825
270	CSF1R_HUMAN	4	7.3405	7.3405
271	CSTN1_HUMAN	1	5.5159	5.5159
272	CU058_HUMAN	1	7.1987	7.1987
273	CXCL7_HUMAN	3	8.3795	8.3795
274	CYB5B_HUMAN	1	5.9466	5.9466
275	CYTA_HUMAN	2	6.3285	6.3285
276	CYTC_HUMAN	4	8.4378	8.4378
277	CYTM_HUMAN	2	6.6125	6.6125
278	DAF_HUMAN	1	5.8679	5.8679
279	DAG1_HUMAN	5	6.4725	6.4725
280	DCD_HUMAN	2	6.9865	6.9865
281	DESP_HUMAN	7	6.7948	6.7948
282	DIAC_HUMAN	7	7.4296	7.4296
283	DKK3_HUMAN	1	5.8106	5.8106
284	DMKN_HUMAN	1	5.8295	5.8295
285	DOPD_HUMAN	2	5.9445	5.9445
286	DOPO_HUMAN	13	7.9402	7.9402
287	DPEP2_HUMAN	6	7.2555	7.2555
288	DPP4_HUMAN	9	7.4377	7.4377
289	DSC1_HUMAN	5	7.0464	7.0464
290	DSC3_HUMAN	1	5.2129	5.2129
291	DSG1_HUMAN	9	7.7532	7.7532
292	DSG2_HUMAN	10	7.2772	7.2772
293	DYHC1_HUMAN	1	5.9224	5.9224
294	ECH1_HUMAN	2	5.1528	5.1528
295	ECHB_HUMAN	1	6.2620	6.2620
296	ECM1_HUMAN	14	8.8780	8.8780
297	EF1A1_HUMAN;EF1A3_HUMAN	1	6.6011	6.6011
298	EF1A2_HUMAN	4	6.9386	6.9386
299	EF2_HUMAN	2	6.6963	6.6963
300	EGFR_HUMAN	2	5.5522	5.5522
301	EGLN_HUMAN	4	7.0001	7.0001
302	ENOA_HUMAN	7	7.4287	7.4287
303	ENPL_HUMAN	14	7.9086	7.9086
304	ENPP2_HUMAN	11	7.8891	7.8891
305	ENTRAP_ACS2L_HUMAN	1	5.6688	5.6688
306	ENTRAP_AGFG1_HUMAN	1	6.4957	6.4957
307	ENTRAP_CDK12_HUMAN	1	6.7887	6.7887
308	ENTRAP_CE290_HUMAN	1	7.2411	7.2411
309	ENTRAP_CHAP1_HUMAN	1	5.0253	5.0253
310	ENTRAP_CO4A_HUMAN;ENTRAP_CO4B_HUMAN	1	7.3509	7.3509
311	ENTRAP_CONTAM_ITIH4_BOVIN	1	7.1153	7.1153
312	ENTRAP_F184A_HUMAN	1	6.3564	6.3564
313	ENTRAP_FIBP_HUMAN	1	7.3722	7.3722
314	ENTRAP_FINC_HUMAN	1	5.9682	5.9682
315	ENTRAP_GPX3_HUMAN	1	7.7377	7.7377
316	ENTRAP_GSDMC_HUMAN	1	7.8780	7.8780
317	ENTRAP_HEMO_HUMAN	1	7.8714	7.8714
318	ENTRAP_IF2P_HUMAN	1	5.3866	5.3866
319	ENTRAP_IMB1_HUMAN	1	5.9482	5.9482
320	ENTRAP_ISY1_HUMAN	1	6.5535	6.5535
321	ENTRAP_ITB4_HUMAN	1	5.3791	5.3791
322	ENTRAP_ITIH2_HUMAN	1	6.1924	6.1924
323	ENTRAP_ITIH3_HUMAN	1	6.5204	6.5204
324	ENTRAP_IZUM3_HUMAN	1	7.1717	7.1717
325	ENTRAP_KPBB_HUMAN	1	6.8818	6.8818
326	ENTRAP_MENT_HUMAN	1	6.6143	6.6143
327	ENTRAP_NEUL_HUMAN	1	6.4832	6.4832
328	ENTRAP_NKD2_HUMAN	1	5.5003	5.5003
329	ENTRAP_NR4A1_HUMAN	1	6.8308	6.8308
330	ENTRAP_O51E2_HUMAN	1	7.1997	7.1997
331	ENTRAP_OR6Y1_HUMAN	1	5.9393	5.9393
332	ENTRAP_PDE6B_HUMAN	1	6.3699	6.3699
333	ENTRAP_RWDD3_HUMAN	1	5.3536	5.3536
334	ENTRAP_SBK1_HUMAN	1	6.0061	6.0061
335	ENTRAP_SLK_HUMAN	1	8.2225	8.2225
336	ENTRAP_SPDLY_HUMAN	1	7.7285	7.7285
337	ENTRAP_SPT20_HUMAN	1	6.5750	6.5750
338	ENTRAP_UBL4B_HUMAN	1	6.1706	6.1706
339	ENTRAP_ZBT39_HUMAN	1	8.5303	8.5303
340	EPCR_HUMAN	3	6.7679	6.7679
341	EPHA1_HUMAN	1	5.5581	5.5581
342	ERAP1_HUMAN	3	5.8674	5.8674
343	ERAP2_HUMAN	3	5.8385	5.8385
344	ERF1_HUMAN	1	6.0510	6.0510
345	ERF3A_HUMAN	1	5.4878	5.4878
346	ERP44_HUMAN	1	5.8301	5.8301
347	EST1_HUMAN	2	5.7426	5.7426
348	ESTD_HUMAN	1	5.4225	5.4225
349	ETFA_HUMAN	1	7.0314	7.0314
350	EXT1_HUMAN	1	5.1474	5.1474
351	EXT2_HUMAN	1	5.2515	5.2515
352	EXTL2_HUMAN	4	6.7404	6.7404
353	F10A1_HUMAN;ST134_HUMAN	1	6.3931	6.3931
354	F13A_HUMAN	22	8.5203	8.5203
355	F13B_HUMAN	7	8.4626	8.4626
356	FA10_HUMAN	8	8.5677	8.5677
357	FA11_HUMAN	10	8.4631	8.4631
358	FA12_HUMAN	6	8.6576	8.6576
359	FA20C_HUMAN	3	6.4912	6.4912
360	FA5_HUMAN	57	8.9384	8.9384
361	FA7_HUMAN	6	7.9866	7.9866
362	FA8_HUMAN	1	5.5572	5.5572
363	FA9_HUMAN	8	8.3477	8.3477
364	FAAA_HUMAN	7	6.5450	6.5450
365	FAS_HUMAN	1	6.0949	6.0949
366	FBLN1_HUMAN	12	8.9103	8.9103
367	FBLN3_HUMAN	5	7.8328	7.8328
368	FBLN5_HUMAN	3	7.2803	7.2803
369	FCG2A_HUMAN	3	6.9329	6.9329
370	FCG3A_HUMAN	4	7.8425	7.8425
371	FCG3B_HUMAN	1	7.1464	7.1464
372	FCGBP_HUMAN	23	8.1899	8.1899
373	FCGRN_HUMAN	1	6.6558	6.6558
374	FCN2_HUMAN	7	7.8590	7.8590
375	FCN3_HUMAN	7	8.7653	8.7653
376	FETUA_HUMAN	6	10.2070	10.2070
377	FETUB_HUMAN	6	8.3131	8.3131
378	FGFR1_HUMAN	2	6.8028	6.8028
379	FGFR4_HUMAN	1	5.3910	5.3910
380	FGL1_HUMAN	6	6.9396	6.9396
381	FGL2_HUMAN	1	5.9404	5.9404
382	FHR1_HUMAN	1	8.4058	8.4058
383	FHR3_HUMAN	4	7.6371	7.6371
384	FHR4_HUMAN	1	6.8850	6.8850
385	FHR5_HUMAN	2	7.3610	7.3610
386	FIBA_HUMAN	41	9.6304	9.6304
387	FIBB_HUMAN	30	9.3613	9.3613
388	FIBG_HUMAN	24	9.2266	9.2266
389	FINC_HUMAN	64	10.1678	10.1678
390	FKB1A_HUMAN	2	6.9847	6.9847
391	FLNA_HUMAN	20	7.4081	7.4081
392	FSCN1_HUMAN	1	6.6360	6.6360
393	FSTL1_HUMAN	1	5.5401	5.5401
394	FUCO2_HUMAN	8	7.0296	7.0296
395	FUCO_HUMAN	5	7.0206	7.0206
396	FUMH_HUMAN	1	4.7353	4.7353
397	G3P_HUMAN	10	7.4782	7.4782
398	G6PE_HUMAN	10	6.8345	6.8345
399	G6PI_HUMAN	2	5.3375	5.3375
400	GABT_HUMAN	1	5.8023	5.8023
401	GANAB_HUMAN	1	4.9555	4.9555
402	GAPR1_HUMAN	2	6.3885	6.3885
403	GDIB_HUMAN	2	6.1974	6.1974
404	GDIR1_HUMAN	1	5.2425	5.2425
405	GDIR2_HUMAN	2	5.9420	5.9420
406	GGCT_HUMAN	2	6.9371	6.9371
407	GGH_HUMAN	6	7.3189	7.3189
408	GIT1_HUMAN;GIT2_HUMAN	1	5.6276	5.6276
409	GLI1_HUMAN	1	5.8551	5.8551
410	GLOD4_HUMAN	1	4.9305	4.9305
411	GLYM_HUMAN	1	6.0519	6.0519
412	GNAI1_HUMAN;GNAI2_HUMAN;GNAI3_HUMAN	1	5.6661	5.6661
413	GNPTG_HUMAN	2	6.7352	6.7352
414	GOLM1_HUMAN	4	5.7284	5.7284
415	GP1BA_HUMAN	6	7.8512	7.8512
416	GPNMB_HUMAN	2	6.1146	6.1146
417	GPV_HUMAN	2	5.9424	5.9424
418	GPX3_HUMAN	6	8.3975	8.3975
419	GRAM_HUMAN	1	6.4174	6.4174
420	GRP75_HUMAN	2	6.6693	6.6693
421	GSHB_HUMAN	1	5.2374	5.2374
422	GSTO1_HUMAN	4	6.9920	6.9920
423	GUC2A_HUMAN	1	7.2340	7.2340
424	H2A1B_HUMAN;H2A1C_HUMAN;H2A1D_HUMAN;H2A1H_HUMAN;H2A1J_HUMAN;H2A1_HUMAN;H2A2A_HUMAN;H2A2C_HUMAN;H2A3_HUMAN;H2AJ_HUMAN	3	7.0772	7.0772
425	H2B1B_HUMAN;H2B1C_HUMAN;H2B1D_HUMAN;H2B1H_HUMAN;H2B1J_HUMAN;H2B1K_HUMAN;H2B1L_HUMAN;H2B1M_HUMAN;H2B1N_HUMAN;H2B1O_HUMAN;H2B2E_HUMAN;H2B2F_HUMAN;H2B3B_HUMAN;H2BFS_HUMAN	2	6.6102	6.6102
426	H4_HUMAN	3	7.2808	7.2808
427	HABP2_HUMAN	8	8.3078	8.3078
428	HBAZ_HUMAN	1	6.3115	6.3115
429	HBD_HUMAN	4	7.9500	7.9500
430	HBG1_HUMAN	1	6.9078	6.9078
431	HBG2_HUMAN	6	8.1399	8.1399
432	HCD2_HUMAN	2	6.5020	6.5020
433	HEG1_HUMAN	3	6.3048	6.3048
434	HEM2_HUMAN	3	6.0488	6.0488
435	HEMO_HUMAN	23	10.5641	10.5641
436	HEP2_HUMAN	24	9.6995	9.6995
437	HGD_HUMAN	1	6.3815	6.3815
438	HGFA_HUMAN	6	8.4594	8.4594
439	HGFL_HUMAN	7	8.2617	8.2617
440	HINT1_HUMAN	1	6.4411	6.4411
441	HLAA_HUMAN	4	6.9796	6.9796
442	HLAB_HUMAN	4	7.0794	7.0794
443	HMCS2_HUMAN	1	6.4000	6.4000
444	HNRH1_HUMAN	1	6.5566	6.5566
445	HNRPC_HUMAN	1	6.3406	6.3406
446	HNRPF_HUMAN	1	6.7273	6.7273
447	HNRPK_HUMAN	2	6.2125	6.2125
448	HNRPM_HUMAN	1	6.1452	6.1452
449	HPTR_HUMAN	4	7.2850	7.2850
450	HPT_HUMAN	18	9.0935	9.0935
451	HRG_HUMAN	22	9.8119	9.8119
452	HS71A_HUMAN;HS71B_HUMAN	1	4.7920	4.7920
453	HS71L_HUMAN	2	6.4866	6.4866
454	HS90A_HUMAN	2	6.5091	6.5091
455	HS90B_HUMAN	6	7.2268	7.2268
456	HSP72_HUMAN	1	6.1518	6.1518
457	HSP7C_HUMAN	13	7.3062	7.3062
458	HSPB1_HUMAN	1	6.8242	6.8242
459	HUTU_HUMAN	1	5.1718	5.1718
460	HV102_HUMAN	1	6.3676	6.3676
461	HV103_HUMAN	2	7.1540	7.1540
462	HV108_HUMAN	2	6.5420	6.5420
463	HV118_HUMAN	1	6.6322	6.6322
464	HV146_HUMAN	1	6.9943	6.9943
465	HV169_HUMAN	2	6.1904	6.1904
466	HV226_HUMAN	1	6.4509	6.4509
467	HV307_HUMAN	4	7.7454	7.7454
468	HV315_HUMAN	4	7.3825	7.3825
469	HV330_HUMAN;HVC05_HUMAN;HVC33_HUMAN	1	5.5006	5.5006
470	HV335_HUMAN	1	7.4364	7.4364
471	HV338_HUMAN	1	6.7608	6.7608
472	HV349_HUMAN	2	7.8139	7.8139
473	HV372_HUMAN	2	6.5372	6.5372
474	HV373_HUMAN	1	6.0681	6.0681
475	HV374_HUMAN	4	7.6578	7.6578
476	HV383_HUMAN	1	6.0916	6.0916
477	HV428_HUMAN	1	5.6530	5.6530
478	HV434_HUMAN	3	7.1490	7.1490
479	HV551_HUMAN	2	6.9705	6.9705
480	HV5X1_HUMAN	2	6.9962	6.9962
481	HV601_HUMAN	3	7.2076	7.2076
482	HV64D_HUMAN	1	6.7172	6.7172
483	HV70D_HUMAN	1	6.7009	6.7009
484	HYAL1_HUMAN	3	6.0337	6.0337
485	HYOU1_HUMAN	4	7.0789	7.0789
486	IBP1_HUMAN	1	5.7046	5.7046
487	IBP2_HUMAN	2	6.1264	6.1264
488	IBP3_HUMAN	7	8.2886	8.2886
489	IBP4_HUMAN	1	6.7375	6.7375
490	IBP5_HUMAN	4	7.1964	7.1964
491	IBP6_HUMAN	1	6.5320	6.5320
492	IBP7_HUMAN	2	6.1412	6.1412
493	IC1_HUMAN	25	10.1335	10.1335
494	ICAM1_HUMAN	7	7.3089	7.3089
495	ICAM2_HUMAN	4	7.4436	7.4436
496	ICAM3_HUMAN	2	5.3970	5.3970
497	ICOSL_HUMAN	3	7.2479	7.2479
498	IF4A1_HUMAN	1	5.3661	5.3661
499	IF5A1_HUMAN;IF5A2_HUMAN;IF5AL_HUMAN	1	5.1200	5.1200
500	IGA2_HUMAN	4	8.2700	8.2700

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: protein_quant_result_table

Sort	Column	Description	ID
\|\|	Protein Name	Name/Identifier(s) of the protein (group)	`ProteinName`
\|\|	Number of Peptides	Number of peptides per proteins	`Peptides_Number`
\|\|	Average Intensity	Average intensity across all conditions	`Average_Intensity`
\|\|	blood plasma	blood plasma	`blood_plasma`

Intensity Distribution

log2(Precursor.Quantity) for each Run (or Sample).

[DIA-NN: main report] log2(Precursor.Quantity) for each Run (or Sample).

Created with MultiQC

Standard Deviation of Intensity

Standard deviation of intensity by sample (experimental conditions).

[DIA-NN: report.tsv] Sample grouping is derived from the SDRF when available; otherwise, it is parsed from "Run" names. First, identify the experimental conditions from the "Run" name. Then, group the data by experimental condition and Modified.Sequence, and calculate the standard deviation of log2(Precursor.Quantity).

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

MS1 Analysis

MS1 Area Distribution

log2(Ms1.Area) for each Run.

[DIA-NN: report.tsv] log2(Ms1.Area) for each Run. Ms1.Area: non-normalised MS1 peak area.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

MS2 and Spectral Stats

Distribution of Precursor Charges

This is a bar chart representing the distribution of the precursor ion charges for a given whole experiment.

[DIA-NN: main report] distribution of the precursor ion charges for a given whole experiment. Precursor.Charge: the charge of the precursor.

Created with MultiQC

Charge-state

The distribution of the charge-state of the precursor ion.

[DIA-NN: main report] The distribution of the charge-state of the precursor ion (Precursor.Charge).

Created with MultiQC

Mass Error Trends

Delta Mass

This plot is based on the "Ms1.Apex.Mz.Delta" column from the DIA-NN main report.

[DIA-NN: main report] Ms1.Apex.Mz.Delta: difference between observed precursor m/z and the theoretical value.

Created with MultiQC

RT Quality Control

IDs over RT

Distribution of retention time, derived from the main report.

[DIA-NN: main report] Distribution of retention time (RT) for each run.

This plot allows to judge column occupancy over retention time. Ideally, the LC gradient is chosen such that the number of identifications (here, after FDR filtering) is uniform over time, to ensure consistent instrument duty cycles. Sharp peaks and uneven distribution of identifications over time indicate potential for LC gradient optimization. See [Moruz 2014, DOI: 10.1002/pmic.201400036](https://pubmed.ncbi.nlm.nih.gov/24700534/) for details.

Created with MultiQC

Normalisation Factor over RT

Distribution of Normalisation.Factor with retention time, derived from the main report.

[DIA-NN: main report] Distribution of Normalisation.Factor with retention time (RT) for each run. RT: the retention time (RT) of the PSM in minutes. Normalisation.Factor: normalisation factor applied to the precursor in the specific run, i.e. normalised quantity = normalisation factor X non-normalised quantity

Created with MultiQC

FWHM over RT

Distribution of FWHM with retention time, derived from the main report. FWHM: estimated peak width at half-maximum.

[DIA-NN: main report] Distribution of FWHM with retention time (RT) for each run. RT: the retention time (RT) of the PSM in minutes. FWHM: estimated peak width at half-maximum; note that the accuracy of such estimates sometimes strongly depends on the DIA cycle time and sample injection amount, i.e. they can only be used to evaluate chromatographic performance in direct comparisons with similar settings, including the scan window; another caveat is that FWHM does not reflect any peak tailing.

Created with MultiQC

Peak Width over RT

Distribution of peak width with retention time, derived from the main report. Peak Width = RT.Stop - RT.Start.

[DIA-NN: main report] Distribution of peak width with retention time (RT) for each run. RT: the retention time (RT) of the PSM in minutes. RT.Start and RT.Stop: peak boundaries.

Created with MultiQC

Absolute RT Error over RT

Distribution of rt error with retention time, derived from the main report.

[DIA-NN: main report] Distribution of absolute RT error (|RT - Predicted.RT|) with retention time (RT) for each run. RT: the retention time (RT) of the PSM in minutes. Predicted.RT: predicted RT based on the iRT.

Created with MultiQC

LOESS RT ~ iRT

Distribution of LOESS RT ~ iRT for each run, derived from the main report.

[DIA-NN: main report] Distribution of LOESS RT ~ iRT for each run. RT: the retention time (RT) of the PSM in minutes. iRT: reference RT as recorded in the spectral library.

Created with MultiQC

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Identification Summary

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Quantification Analysis

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MS1 Analysis

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Intensity Distribution

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MS1 Area Distribution

Distribution of Precursor Charges

Charge-state

Delta Mass

IDs over RT

Normalisation Factor over RT

FWHM over RT

Peak Width over RT

Absolute RT Error over RT

LOESS RT ~ iRT