Publications & Community¶
Citing pmultiqc¶
If you use pmultiqc in your research, please cite:
Yue QX, Dai C, Kamatchinathan S, Bandla C, Webel H, Larrea A, Bittremieux W, Uszkoreit J, Müller TD, Xiao J, Cox J, Yu F, Ewels P, Demichev V, Kohlbacher O, Sachsenberg T, Bielow C, Bai M, Perez-Riverol Y. pmultiqc: An open-source, lightweight, and metadata-oriented QC reporting library for MS proteomics. Mol Cell Proteomics. 2026;101530. DOI: 10.1016/j.mcpro.2026.101530
Related Publications¶
quantms Ecosystem¶
| Paper | Journal | Year | DOI |
|---|---|---|---|
| quantms: a cloud-based pipeline for quantitative proteomics | Nature Methods | 2024 | 10.1038/s41592-024-02343-1 |
| Ibaqpy: A scalable Python package for baseline quantification | J Proteomics | 2025 | 10.1016/j.jprot.2025.105440 |
| SDRF: A proteomics sample metadata representation | Nat Commun | 2021 | 10.1038/s41467-021-26111-3 |
| quantms-rescoring: ML-powered PSM rescoring | bioRxiv | 2026 | 10.64898/2026.01.12.698877 |
Papers Using pmultiqc¶
If your paper uses pmultiqc, please open an issue or submit a PR to add it here.
| Paper | Journal | Year | DOI |
|---|---|---|---|
| Your paper here | — | — | Submit |
Tools Using pmultiqc¶
| Tool | Description | Link |
|---|---|---|
| quantms | DDA proteomics Nextflow pipeline | Integrated as QC module |
| quantmsdiann | DIA proteomics Nextflow pipeline | Integrated as QC module |
| MultiQC | General-purpose QC aggregation framework | pmultiqc is a MultiQC plugin |
Community¶
- GitHub Issues: Report bugs or request features
- quantms.org: Ecosystem homepage
- Data Portal: Browse reanalyzed datasets
- Contact: ypriverol@gmail.com